Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02983 ATGTTGAAAACTGCAGGGTACGATGGTATGAAAGGTGTTGAAAACTTTGGTGGTGTTAATGGCAGTGATGGTGAGCATAGAATATCTATGAACAGAATGAAGAATCACATTAGCTTCTCACCAAGGAGTCCTTCTTCTTTGGGAATTTTATCACCAACCTCTAAAATGGGCACGGAGGGTCTTAGGGTAACTAGCCCCGAGGATGGTAGACATGGAGGTACCAATGGTGATGCTCGATATTACGGTCCTGGATTCCCTTATGCTTCTTGGAATGAGACGTCAAACCCCAAAAGACAGCGAAATAGTAATGATGAGTTACTTTCTGAAGCTCAGAATGGAGAGCTGGGAAATCAAGTTCATTCTCTTTCGTATCATTTGAGTTTGCCAAGAACGTCCTCGGAGATGTTTGCTATGGACAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAAACCTTCAGAATCAATTCAAGAATCTGAGCGAAAGACGGGCTAAATGCAAATGTATAAACATGCAGAAACCAGAAACAGATAAAATTGCTTGA 711 0.4163 MLKTAGYDGMKGVENFGGVNGSDGEHRISMNRMKNHISFSPRSPSSLGILSPTSKMGTEGLRVTSPEDGRHGGTNGDARYYGPGFPYASWNETSNPKRQRNSNDELLSEAQNGELGNQVHSLSYHLSLPRTSSEMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKNLSERRAKCKCINMQKPETDKIA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02983 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 225 IPR036638 GO:0046983
Vimu6g02983 236 Pfam Helix-loop-helix DNA-binding domain 164 209 IPR011598 GO:0046983
Vimu6g02983 236 FunFam Transcription factor bHLH130 family 159 228 - -
Vimu6g02983 236 SMART finulus 164 214 IPR011598 GO:0046983
Vimu6g02983 236 MobiDBLite consensus disorder prediction 37 78 - -
Vimu6g02983 236 Coils Coil 198 225 - -
Vimu6g02983 236 MobiDBLite consensus disorder prediction 37 60 - -
Vimu6g02983 236 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 229 - -
Vimu6g02983 236 Gene3D - 160 230 IPR036638 GO:0046983
Vimu6g02983 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Vimu6g02983 236 Coils Coil 171 191 - -
Vimu6g02983 236 CDD bHLH_AtbHLH_like 163 216 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02983 Vimu-Chr6 26326943 26328083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02983 85 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 63.309 9.08e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g02983 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02983 - - gmx:100814652 382.874