Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02978 ATGGCATTTCAACTGTCACTCATTTGTTTGATCTCCACCATCGTGATTGCATTCATACTATGGAGAAAACAAAAGAAGACCCTCCTTCCACCAAGTCCAATGGCCCTCCCCATCATTGGTCACCTCCACCTTCTCTCCACAATACCTCACCGAGATTTTCACAAGCTCTCAATCCGTTATGGACCCATCATGCACCTTTTCCTCGGTTCAGTCCCTTGTGTGGTGGCTTCAACCGCAGAAGCCGCCAAAGACTTCCTCAAAACTCACGAATCCTCCTTCTCCAACCGCATTGCTCAAACCGTCGCCATTGAGGCCTTAACCTACGGCTTCCAAGACTTTTTCTTCGCACCTGACGGACCCTATTGGAGGTTCATGAGGAAACTGTGCATGTCTGAACTTCTCGGTGGCCACATGTTAGACCAGCTCCTTCCCGTGAGGCAGCAAGAGAGCAAGAGATTCATCCAACACCTGCTCCGAAAAGGGGTGGCTGGTGAGGCCGTGGATTTTGGAGGAGAGTTGATGACACTCTCGAATAACATCGTGTCGAGAATGACTGTGGGTCACACGAGTACTGAAAACGAGAAGGACGTTGAAGAGATGAGAAAGCTGGTGGCGGATGCCGCTGAGCTTGTGGGGAAGTTCAACATATCGGACTTCATTTGGTTCTTTAAGCGTCTCGATTTGCAGGGATTCAACATGAGGCTCAAGCAAACTCGGGACAGATTTGATGCTGTGTTAGACAGAATCATAAAGCAGCGTGAAGAGGAAAGAAGGAACAACAGACAAACCGGTGGAACACGTCCGTTTAAGGATATGCTCGATGTTTTGTTGGACATCTTCGAAGATGGGAGTTCTGAAATAAAACTAAACAAAGAGAATATTAAAGCCTTCATCCTGGATTATTATTTAAGATTAGGAATTCCTATCATTCTTGATTTCCTTTCGTGCACACTAACATGTGTTTCTAATGACAATATTCAGGACATATTTGTTGCTGGGACTGACACGACATCATTAACCATTGAATGGGCTCTGTCAGAGTTAATAAACCATCCACATGTGTTGGAGAAGGCAAGGCTAGAAATAGACGCAGTTGTTGGAAAGAGTAGAATCGTGGAAGAATCAGACATTAAGAACCTTCCTTACCTGCAAGCCATTGTTAAAGAAACATTCAGGCTTCACCCACCTGGTCCATTACTTATTAGAGAGTCATCAACCAGTGAAGTGGTGTGTGGATATAATATTCCAGCCAAAACTCGATTATTTATCAACATTTGGGCTATTGGCAGAGACCCCAATCAGTGGAAAAACCCTCTTGAGTTCATGCCAGAGAGGTTTATTGATGAAGAGGGAAATGTGCATAGTGAATTTGATGTTAGGGGACAAAGTTATCATCTTCTTCCTTTTGGAACTGGTAGAAGAAGGTGTCCTGCTATTTCTCTGGCATTACATGTTCTGCATGTGAATCTTGCTGCACTGATTCAGTGTTTCCAATTAAAGGTTAATGGTGGAGATGGCAAGGTGGACATGGAAGAAAAGCCTGGCCTCACTCTTCCAAGGGCTCACCCCTTAATCTGTGTCCCTGTTCCAAGGCTTAACCCATTCCCTGCTATATGA 1617 0.449 MAFQLSLICLISTIVIAFILWRKQKKTLLPPSPMALPIIGHLHLLSTIPHRDFHKLSIRYGPIMHLFLGSVPCVVASTAEAAKDFLKTHESSFSNRIAQTVAIEALTYGFQDFFFAPDGPYWRFMRKLCMSELLGGHMLDQLLPVRQQESKRFIQHLLRKGVAGEAVDFGGELMTLSNNIVSRMTVGHTSTENEKDVEEMRKLVADAAELVGKFNISDFIWFFKRLDLQGFNMRLKQTRDRFDAVLDRIIKQREEERRNNRQTGGTRPFKDMLDVLLDIFEDGSSEIKLNKENIKAFILDYYLRLGIPIILDFLSCTLTCVSNDNIQDIFVAGTDTTSLTIEWALSELINHPHVLEKARLEIDAVVGKSRIVEESDIKNLPYLQAIVKETFRLHPPGPLLIRESSTSEVVCGYNIPAKTRLFINIWAIGRDPNQWKNPLEFMPERFIDEEGNVHSEFDVRGQSYHLLPFGTGRRRCPAISLALHVLHVNLAALIQCFQLKVNGGDGKVDMEEKPGLTLPRAHPLICVPVPRLNPFPAI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02978 538 Pfam Cytochrome P450 30 301 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 Pfam Cytochrome P450 325 526 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 SUPERFAMILY Cytochrome P450 29 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 FunFam Cytochrome P450 family protein 21 304 - -
Vimu6g02978 538 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Vimu6g02978 538 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 525 - -
Vimu6g02978 538 CDD CYP93 61 528 - -
Vimu6g02978 538 Gene3D Cytochrome P450 21 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g02978 538 FunFam Predicted protein 330 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02978 Vimu-Chr6 26288830 26290697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02978 7 531 Cytochrome P450 AT5G06900 46.490 4.75e-170 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02978 K24188 - gmx:100815706 756.133