Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02973 ATGGCGTACGCTGCGATGAAACCCACCAAGCCCGGCTTGGAGGAATCTCAAGAACAGATTCACAAGATAAGGATCACCCTATCTTCCAAGCACGTCAAAAATCTCGAGAAGGGTATGCATCAATTCATTCAACTTCTCCTTTTTGCTTATGTTTCAACTTTGATGTTACTGTTAGTTTGTTCGGACTTGGTTCGCGGTGCAAAGGACAAGCGCCTCAGGGTTAAGGGACCAGTTAGGATGCCAACTAAGGTTCTTCACATCACTACAAGGAAATCCCCTTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCAGATGTTGTAAAGCAGATTACCTCGATTACAATTGAACCTGGTGTGGAGGTTGAGGTGACCATTGCAGACGCCTGA 432 0.463 MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKGMHQFIQLLLFAYVSTLMLLLVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02973 143 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 142 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g02973 143 FunFam Uncharacterized protein 48 143 - -
Vimu6g02973 143 Pfam Ribosomal protein S10p/S20e 56 139 IPR027486 -
Vimu6g02973 143 Hamap 30S ribosomal protein S10 [rpsJ]. 41 140 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g02973 143 PRINTS Ribosomal protein S10 family signature 78 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g02973 143 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g02973 143 PRINTS Ribosomal protein S10 family signature 100 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vimu6g02973 143 ProSitePatterns Ribosomal protein S10 signature. 67 82 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu6g02973 143 SMART Ribosomal_S10_2 44 139 IPR027486 -
Vimu6g02973 143 NCBIfam 30S ribosomal protein S10 56 140 IPR005729 GO:0003735|GO:0006412|GO:0015935
Vimu6g02973 143 Gene3D Ribosomal protein S10 domain 6 142 IPR036838 -
Vimu6g02973 143 SUPERFAMILY Ribosomal protein S10 45 140 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02973 Vimu-Chr6 26254368 26255739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02973 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 76.923 1.07e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02973 K02969 - gmx:100817306 228.409