Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02971 ATGCTCGGCGTCGTCGTCGTTTGCCTCCACGGTGCTTTCCGTGTGCCTGAGGATCTGTTCCTCGACGAGCAGGACACCTCTCAGACAACCGGATTCCGCTCCTTCCTTGGCGGCCCCGCCGTTGTCGCCACTGTTGTTCCAGTCATGTCTGCGCGAGAGGGTGATGCTGTTGCTGAAGAAACAAAGAAAAGTAACCATGTGCAGAGAAAAATTGAGAAGCGCCAGAAAGATCGCAAACTTGATGCTCACATTGAAGAGCAATTTGGTGGTGGCAGATTGTTGGCATGTATCTCTTCTCGCCCTGGACAATAA 312 0.5256 MLGVVVVCLHGAFRVPEDLFLDEQDTSQTTGFRSFLGGPAVVATVVPVMSAREGDAVAEETKKSNHVQRKIEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQ 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02971 103 PANTHER 40S RIBOSOMAL PROTEIN S8 53 103 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vimu6g02971 103 MobiDBLite consensus disorder prediction 56 76 - -
Vimu6g02971 103 Gene3D Ribosomal protein S8e, subdomain 45 91 IPR042563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02971 Vimu-Chr6 26244945 26245447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02971 46 103 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 64.407 4.40e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02971 K02995 - gmx:100500112 102.064