Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02964 ATGGGTCCCCAAAGCAACCTTATATCTCTTTTGGTTGCTCTGGCAGCAGTTTTTTCATCTTTGTATCTCATAAATCCAATTCCACAGTATCTCATAAATGCCTTGTCACCTTCATCGGCATACTTGGGAAAACCTTTATCAGGGAACTTCCAAAGACATCACAAGAAACACCCTGATAGTGGGAACACCGATTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAGTAACACTTCGTATCTCTGTGTTGATCGAAAAGGGTGCTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAAGTTATGGTGCCAAAAACAAAACCCAACATTACATTTCAAGGACAAGGCTATACTTCAACTGCAATTGCATGGAATGACACCGCATTATCCGCGAATGGAACGTTTTACAGTGGCTCTGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCGAGTCCTGGAGCTGTAGGGGCACAAGCAGTAGCCATTAGAGTATCTGGAGATCAATCTGAATTTAAGGGCTGTGGATTCTTTGGAGCACAGGACACCCTTCATGATGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCCCTCTACGTGAACTGCGAAATAGTTTCTATAGCGAACCCTGTACCGGTGGGACAAAGGAGCATAAATGGCGCTGTTACAGCTCATGGTAGAGTTTCAGGTGATGAAAACACAGGGTTTGCATTTGTGAACAGTACAGTTGGAGGAAACGGTAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATCAATGTCTGATATCATTGCTCCCGAAGGTTGGAATGATTTCAACGACCCTTCCAGAGACCAGACTATCTTCTATGGAGAATATAACTGCTCAGGATCAGGTGCTAACACGAACTTGAGGGCACCTTACGTACAGAAATTAAATGAAACACAAGCTTCTGCTTTCCTCAACATTACTTTTATAGATGGCGAGCAATGGTTGGAAACTTCTAAATATTAA 1164 0.421 MGPQSNLISLLVALAAVFSSLYLINPIPQYLINALSPSSAYLGKPLSGNFQRHHKKHPDSGNTDSICDDFPPGIPPPNTSNTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVMVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYVNCEIVSIANPVPVGQRSINGAVTAHGRVSGDENTGFAFVNSTVGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGSGANTNLRAPYVQKLNETQASAFLNITFIDGEQWLETSKY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02964 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 383 - -
Vimu6g02964 387 Pfam Pectinesterase 87 378 IPR000070 GO:0030599|GO:0042545
Vimu6g02964 387 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
Vimu6g02964 387 FunFam Pectinesterase 79 387 - -
Vimu6g02964 387 Gene3D - 79 387 IPR012334 -
Vimu6g02964 387 SUPERFAMILY Pectin lyase-like 84 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02964 Vimu-Chr6 26133523 26135653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02964 56 385 Carbohydrate Esterase AT1G05310 72.121 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02964 - - gmx:100806629 718.768