Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02963 ATGATTGCTGATTTCAAATTTCATGGCCCACTAAATTTAACAGGTGGCATGACTGAGTTCATCTTTGAAAGACAGCTTCAGCGGATGGATACGAGTGGCAAACAATTTTCATTTTCATACAAAATGGCAGGAACTGGTTTCTACACCTCCTGTCTTTCCTCTTCCAGCAACTTAGGGGCATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCACTGCCAGGGAAACTACCTGGAACTGGAATGAGAAGATTGGCAATAAGAGCAGAAGTTGAATTTGTGAACGCTGACAAGGCGAAGGAACTTGTGGAAGTGGATGGGTATGCTGTTCTTGACGTGAGGGACAAGAATCAATTTGAACGAGCTCACATAAAATCTTGTAGTCATGTGCCTCTTTTTATTGAAAACAAAGATAATGATCCTGGTACTATTATCAAAAGGCAACTGCACAATAATTTTTCTGGGTTGTTCTTTGGATTGCCATTCACTAAGCCAAATCCTGATTTTATACAATCTGTTAAGACTCAGTTTCCACCTGAAAGTAAACTCTTGGTTGTGTGCCAGGAAGGACTAAGGTCTGCTGCAGCAGCAGATAAGTTAGAGAAAGCTGGTTATGAAAATATAGCATACATAACATCTGGCCTTCAAACCGTAAAACCAGGGACATTTGAGTCTGTAGGGTCCACAGAGTTGGAGAATGCAGGCAAAGCTGGTTTGGTGACAATCCAAGGAAAAATCTCAACTGTTTTGGGAACTATTCTTGTTTGTGCATATATATTCGTTACATTCTTCCCTGAGCAAGCAGAGAAGCTATTCCAATTGGCCCCTACAGGATAA 837 0.4098 MIADFKFHGPLNLTGGMTEFIFERQLQRMDTSGKQFSFSYKMAGTGFYTSCLSSSSNLGACWLVLKTHNARALPGKLPGTGMRRLAIRAEVEFVNADKAKELVEVDGYAVLDVRDKNQFERAHIKSCSHVPLFIENKDNDPGTIIKRQLHNNFSGLFFGLPFTKPNPDFIQSVKTQFPPESKLLVVCQEGLRSAAAADKLEKAGYENIAYITSGLQTVKPGTFESVGSTELENAGKAGLVTIQGKISTVLGTILVCAYIFVTFFPEQAEKLFQLAPTG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02963 278 Pfam Rhodanese-like domain 96 216 IPR001763 -
Vimu6g02963 278 ProSiteProfiles Rhodanese domain profile. 104 227 IPR001763 -
Vimu6g02963 278 SMART rhod_4 94 224 IPR001763 -
Vimu6g02963 278 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 89 216 IPR036873 -
Vimu6g02963 278 Gene3D - 83 223 IPR036873 -
Vimu6g02963 278 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 42 277 IPR044615 -
Vimu6g02963 278 CDD RHOD 99 219 - -
Vimu6g02963 278 FunFam Rhodanese-like domain-containing protein 9, chloroplastic 81 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02963 Vimu-Chr6 26128859 26131053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02963 55 272 Sulfurtransferasese or Rhodanese AT2G42220 68.349 3.06e-108 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02963 - - vum:124827221 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02963 6 26128859 26131053 Vimu6g02963 6 26128859 26131053 ECH