Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02962 ATGATTCGCCACTTTCTCTATGTGCATCTTAATCTCTTTGTATTCTCAATTTTGATTTCTCAGATCTTGGCGTTCACGCATCCAAGCGAAGTGTCAGCTCTGCAGGATCTATACAGGACCTTTAACTACCCACCTGTGCTCAACGGATGGAATGGTAGCGATCCTTGTGGAGAGTCTTGGACAGGAGTTGCTTGTTCTGGACCATCAGTTATACAACTAAAACTTCAAGGATTAAACCTCACAGGGTATATTGGAAGTCTGCTATATAATCTACCTAACTTGAAGCAACTGAATTTAAGCCACAATTTACTACATGGACCAATTGGTGATGTATTTGCTTTAAATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCGGGAGATCTACCATATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTCACCTACTTGGCTGAACTTCCTCTAACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCGCAGCATTTTCAATCTATACTGAATTTATGGATTGGAGACAATAAATTCTATGTGGCCGATAACTCTCCTCCCTGGACTTTTCCGCCAGATACCATGTCAATTGAGCAGAACACTAGTAGCCCACCCACGACTCAGGCAATTGTCGCCCAGAATTATTCTCGTCCCAGTGAGGCTCCTCCCAGAGTAAATGAGACTCATCCCAGGGTAAATGAGACTCATACCAGAGTAAGAGAGGCTCCTCCCAGAGTACATGAGGCTCATCACAAGGTAAATGAGGCTTCTCCCGGATTACGTGAGGCTCGTCCTAGAGTAAATGGTGATCATCCCAGGGTAAATGAGGCTCATCCCAGAGTAAGAGAGGCTCCTCCCAGAGTACATGAGGCTCCTTCCGGAGTAAGCGAGGCTCCTCCTGGAGTAAGCGAGGCTCCTCCTAGAGTAAATGAAGCTCGTCCGAGGGTAAATGAGGCTCCTCCCCAGGTACACGAGGCTCCTGTCAAAGTAATCAAGCACAAGAAAAATAATGTAGGTCCAAGAGGAATAGCATTTATGATTGGTGGAGGAACACTAATGGCCACAGGGGTGGCTCTCTTTGTTGCAATCCTTTTGAATAAACTTCGTCTAGAGAGCCCGAACTTGAAGAGCTCAGAAAGCAGCCATGGCTCATTTCCTTCTCATCCGACCAGTGCTACCATAGGGGTATCTTCTACCGCACTCGAGGAGAGCCCAAGCATTCCCCTCTTTAATTCTGCATCCTTGTTGGGTCCTGTGAGATTACTTTCCATGAACCATAACAATACCGAGGAAACATTCAGAAAAGGTTTTTCTAAAAGTGACAGATACTCTGGAAGAACGAAAATTTACACAGTAGCAGAGCTTGAGTTAGCTACTAATTGCTTCAGTGAAGCCAACATCCTAGGAGAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGACAAAATTTTGGCCGTGAAGGAGATAAACATCGCGCAAATGTCTTTGAAAGAAGAGGAAAAGCTCTTGGATGTCATTTGCACGGTTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAAAGGTTACTGTTTGGATAAAGGAAAGGGTCTACTTGTTTACGATTATGTTGGAAATGTCACTCTAAACGACGCCCTTCACAGCGAGGCATGCGAACCTGTGTCATGGGTTCACCGTCTCCGGATTGCTCTAGGTGTTGCTCAGGCTCTAGACTATTTGCACTCAGCGTTCTGCCGTCCCGTGGCCCACGGCAATTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTGATGCCTCGAGTTTGTGACTGTAGCTTGGTTATTTTGCGAACACTGACTATCAGTCAATTTGAAAAACGGGCTAATGAGATTGATATTGAAGAGATGGGCTACCATGCGCCTGATCATGGCCAACAAGGAACCAGCAGCAGAAACAGAGACGTTTTTGCCTTCGGGGTGTTGCTGCTGGAACTGTTAACAGGAAAGAAACCTTTTGATAGAGCCAGGTCAGTGGAGGAGCAATATCTGGTGAAATGGGCTCTGCCCATGCTTCCTTATAGAGCGAGTTTGGAACAGTTGGTGGATCCCCGCATGAAAAGAACATTTTCGTCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGCCTGCAAGGCGACTCCGTCCTGCAATGAGTGAAGTTATGGAGTCTCTTGAATCTTTATACCAAATGTTCGACATTGAAAAGAGCGATGTAGCAGATGGTACTGAACTCGATCCAGTTTAG 2331 0.4505 MIRHFLYVHLNLFVFSILISQILAFTHPSEVSALQDLYRTFNYPPVLNGWNGSDPCGESWTGVACSGPSVIQLKLQGLNLTGYIGSLLYNLPNLKQLNLSHNLLHGPIGDVFALNNLKEMDLSYNNFSGDLPYSFGSLRNLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGILPQHFQSILNLWIGDNKFYVADNSPPWTFPPDTMSIEQNTSSPPTTQAIVAQNYSRPSEAPPRVNETHPRVNETHTRVREAPPRVHEAHHKVNEASPGLREARPRVNGDHPRVNEAHPRVREAPPRVHEAPSGVSEAPPGVSEAPPRVNEARPRVNEAPPQVHEAPVKVIKHKKNNVGPRGIAFMIGGGTLMATGVALFVAILLNKLRLESPNLKSSESSHGSFPSHPTSATIGVSSTALEESPSIPLFNSASLLGPVRLLSMNHNNTEETFRKGFSKSDRYSGRTKIYTVAELELATNCFSEANILGEGSLGPVYRAKFPDDKILAVKEINIAQMSLKEEEKLLDVICTVSRLKHPNIVALKGYCLDKGKGLLVYDYVGNVTLNDALHSEACEPVSWVHRLRIALGVAQALDYLHSAFCRPVAHGNLKAANVLLDENLMPRVCDCSLVILRTLTISQFEKRANEIDIEEMGYHAPDHGQQGTSSRNRDVFAFGVLLLELLTGKKPFDRARSVEEQYLVKWALPMLPYRASLEQLVDPRMKRTFSSKALSRYADIISLCIQPARRLRPAMSEVMESLESLYQMFDIEKSDVADGTELDPV 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02962 776 SUPERFAMILY Protein kinase-like (PK-like) 456 754 IPR011009 -
Vimu6g02962 776 Gene3D Ribonuclease Inhibitor 26 218 IPR032675 -
Vimu6g02962 776 MobiDBLite consensus disorder prediction 231 337 - -
Vimu6g02962 776 Gene3D Transferase(Phosphotransferase) domain 1 556 772 - -
Vimu6g02962 776 Pfam Protein tyrosine and serine/threonine kinase 481 753 IPR001245 GO:0004672|GO:0006468
Vimu6g02962 776 Gene3D Phosphorylase Kinase; domain 1 438 554 - -
Vimu6g02962 776 ProSiteProfiles Protein kinase domain profile. 477 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02962 776 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Vimu6g02962 776 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 88 205 - -
Vimu6g02962 776 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vimu6g02962 776 MobiDBLite consensus disorder prediction 242 302 - -
Vimu6g02962 776 SUPERFAMILY L domain-like 26 442 - -
Vimu6g02962 776 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 442 554 - -
Vimu6g02962 776 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 756 IPR046959 -
Vimu6g02962 776 FunFam Leucine-rich repeat receptor-like protein kinase 555 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02962 Vimu-Chr6 26119874 26124792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02962 449 772 Strubbelig Receptor Gene Family AT5G06820 53.846 6.61e-106 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu6g02962 PK_Tyr_Ser-Thr 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02962 - - vra:106757519 1464.51