Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02959 ATGGGTTCAGACGCTGCTACCACCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACTCCAGCCACTTCTCTTACTTCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGGTGTTACTTCCTCTTCCTCTTCCTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCCGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGGTCAACCCATCTTTCATTGTTGTTATTACCTGAAACAAAAAATTCTTTCCTTTTCTTCTTCTTGTGCTCTTTTAATATTTTACTATAA 462 0.4437 MGSDAATTKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSAAAAVAAAAGVTSSSSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRSTHLSLLLLPETKNSFLFFFLCSFNILL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02959 153 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 125 IPR044817 GO:0003677
Vimu6g02959 153 MobiDBLite consensus disorder prediction 52 69 - -
Vimu6g02959 153 ProSiteProfiles Zinc finger SBP-type profile. 76 153 IPR004333 GO:0003677
Vimu6g02959 153 Pfam SBP domain 79 130 IPR004333 GO:0003677
Vimu6g02959 153 SUPERFAMILY SBT domain 77 129 IPR036893 GO:0003677|GO:0005634
Vimu6g02959 153 Gene3D - 69 140 IPR036893 GO:0003677|GO:0005634
Vimu6g02959 153 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02959 Vimu-Chr6 26103009 26103470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02959 19 134 SBP-box Gene Family AT3G57920 48.276 1.23e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu6g02959 SBP 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02959 - - gmx:100807165 169.088