Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02956 ATGTTCTCCTTTCGAAAACTCCACGCTCAGTGCTCCTTCTTCCTTCTTAAACCCTGCCAAAACCCTAGACTTCAGAGCACGAAATCCGCTACCAAATTCGCCAGAAAAGCCACCCTAAAAGAAGCCCAAGCCGCATTGCTCGAGTACCTCCACTCCACGCGCAGCCTTAACTTCTTAGACGCCGACAACATGTGCAGAAACTCGCCCTCCTTCATCCAGGACCTCCTCGCCAAAACCCACTCGCACACGCCGCACGTGAATACCAAGCGCTGCATCTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCATTCTTCGAGAGCGCGGGTCTCTCCCCTTCCGAGTACGCGCCCCTTCTCCCGCCTCATATGATTTACCTAAACGACGACGTTCTGCTCATGGAGAATCACCAGACTCTCTGCAACTTCGGGGTACCCCGCACCAAGATGGGGAGGGTTTTCAAACTCGCACCTCAGGTTTTTCGGTATAAACCCGGGATCTTGATCTCGAAGCTTCAGGAGTACGAAAAGCTCGGTGTTTCTCGGAAGACTTTGATCAATGTGGTTGCTTCCAATCCCTGCATTTTGGTTGGGGGTGTTGATTTTGATTTTGTTAAGGTTGTGGAGATGTTGAAGAGTGTTATTGGAAAGGATTGTGATTGGATTGGAGAGCATTTGTTGATTAACAAGGATTGTTGTAATTGGAGGGTGATGTTTCATGTTTTGATTTTGCTTTCTAGAGTTTTCAACGAGAAACAATTGGGGGATTTAATCACTCGTAATCCTGGATTGATTTTTGAGGAATCTGGAAGTTGTGTGTTATCCTTGATTGGCTTTTTGTTGAAATTTGGATTGTCTGTAAACCGGGTTTGTGTCATGCTGCAGGAGTTTCCGGAGATTCGGGTTGTGAAATTTTTGTCCAATTTGAGACTGTGTTTTCTGTTCTTGACAGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGTTTGGTGTTGGGTTCCTTCACCATAAAGAGAACGATTACTTTACTTACTAACTTGAATGTTGGAAAGAAGCGAATGTGTAGAGTTGTGAAGGATGATCCTCTAGTAATGGAGCGTTGGGCTTTGGGAAGGAGGATTGAGCCTCTAGTTAACTCGTATTTGGAGTTTGAATCCAGGGCGCTGAAGAAGGAGTTCATGCTGAGCTTGGGGTATGAAGAGAACTCCAAAGCAATGAATGAGTCGATTAAGTTGTTCAGGGGTAGGGGAGCTGAGCTCCAGGAGAGACTTGAGTTTATTGTTAATGCTGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGGGAGTCCCCGCGGATTCTTAGTCAGACCACTGATAGGATCAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATGCAATGTCGGATTTGGCTAGTTTTCCTTCCTTCCTTTCCTATTCGGCTCAAAGGGTTAAGCTAAGGTTTTCAATGTATAATTGGTTAAAAAAGCATGGAGCTGCAGAAGCAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGATAAAGCGTTTGAGAAGATGTACGTGAATCGCCATCCCTCTGGCCTTCAAGTTTGGCGGGATTTAAAGGCACAAATTTCTTCTATGGCTTAG 1659 0.4581 MFSFRKLHAQCSFFLLKPCQNPRLQSTKSATKFARKATLKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFIQDLLAKTHSHTPHVNTKRCISRYLRYHPINEFEPFFESAGLSPSEYAPLLPPHMIYLNDDVLLMENHQTLCNFGVPRTKMGRVFKLAPQVFRYKPGILISKLQEYEKLGVSRKTLINVVASNPCILVGGVDFDFVKVVEMLKSVIGKDCDWIGEHLLINKDCCNWRVMFHVLILLSRVFNEKQLGDLITRNPGLIFEESGSCVLSLIGFLLKFGLSVNRVCVMLQEFPEIRVVKFLSNLRLCFLFLTEIEMEASEIGRILQSHCLVLGSFTIKRTITLLTNLNVGKKRMCRVVKDDPLVMERWALGRRIEPLVNSYLEFESRALKKEFMLSLGYEENSKAMNESIKLFRGRGAELQERLEFIVNAGLDYEVVCKMIRESPRILSQTTDRINMKIESLVNEGYAMSDLASFPSFLSYSAQRVKLRFSMYNWLKKHGAAEAGLALSTIIACSDKAFEKMYVNRHPSGLQVWRDLKAQISSMA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02956 552 Pfam mTERF 247 385 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 Pfam mTERF 425 527 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 Gene3D Transcription termination factor 3, mitochondrial 71 237 IPR038538 -
Vimu6g02956 552 Gene3D Transcription termination factor 3, mitochondrial 276 544 IPR038538 -
Vimu6g02956 552 SMART mt_12 188 220 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 SMART mt_12 476 509 IPR003690 GO:0003690|GO:0006355
Vimu6g02956 552 FunFam Transcription termination factor MTEF18, mitochondrial 278 544 - -
Vimu6g02956 552 PANTHER CGI-12 PROTEIN-RELATED 248 534 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02956 Vimu-Chr6 26078760 26081943 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu6g02956 mTERF 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02956 - - gmx:100807690 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02956 6 26078760 26081943 Vimu6g02956 6 26078760 26081943 ECH