Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02955 ATGGAAGATTTGAAGAAGAGAAAACTGGACGAAGCAGGAAACGGTGATTTTGCCTCCAAGGAAGAACTTCGCTTCCTCATTGAACCTCTTGCTAAACCCCAGCTTGTTGATCTTCTAGCTAAACTTTTGGACTTGCAGGATTTGGCCTTAAAATTGTTGAAGCGTGGATATTTAGGAATTAGTGATACGGGTGTTATCGAAATATGGACAACCATAACAATTTCCTCCTTCTTGCATTCCATTAAGCTGTCTCACCCCCATTGCCAGCCGTTTCTTCTTGTGGGGATGAAAGAAGAAATAAAAAGTATTGCAAGTGCTGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCAATTCGGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAGGTAACAGGGAAGTCCCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCTTCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGTAGTGCTCCTGATGTTTCCCTGAGGAAGCTTTATATAGGAAGCTTATCACCAGAAGTCACAAGTGAAATGCTGCTCAACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATACGACAGGGATACAAATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCAGAAGCTGCCAAGAAGGCCATAGATGATCTTGAAAAGACTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCCAACAAAGGAAAAACTGGGCAGCCGCCATTTCCCTCTGGAGTGGTTCCAATGGCTGGCTTACCTATGACCACAGGCTATATGCAGCCTGGTAAAGGTCATGTAAGCTCTGGCCACCCTATAAATTACAATTACCCCCAAACTGTTACACCGTATTCCGCATCTCCTTATCCAAACCCTCACACTGTACCTTCTCCTTATCCAACACAAGGGCAGATTCCTTACCCTCCTCTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACCCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1152 0.4349 MEDLKKRKLDEAGNGDFASKEELRFLIEPLAKPQLVDLLAKLLDLQDLALKLLKRGYLGISDTGVIEIWTTITISSFLHSIKLSHPHCQPFLLVGMKEEIKSIASADPAHRKLFVRGLAWNTNSETLRAAFEEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRASSKLIDGRLAVCNLACEGLSGTSSAPDVSLRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIIVKYADSNKGKTGQPPFPSGVVPMAGLPMTTGYMQPGKGHVSSGHPINYNYPQTVTPYSASPYPNPHTVPSPYPTQGQIPYPPLSAKKDQHGFPPTQPVGMNNYPYYYPKQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02955 383 CDD RRM2_NsCP33_like 203 277 - -
Vimu6g02955 383 SUPERFAMILY RNA-binding domain, RBD 196 296 IPR035979 GO:0003676
Vimu6g02955 383 Gene3D - 102 188 IPR012677 -
Vimu6g02955 383 MobiDBLite consensus disorder prediction 335 351 - -
Vimu6g02955 383 SUPERFAMILY RNA-binding domain, RBD 104 188 IPR035979 GO:0003676
Vimu6g02955 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Vimu6g02955 383 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 93 179 - -
Vimu6g02955 383 SMART rrm1_1 112 184 IPR000504 GO:0003723
Vimu6g02955 383 SMART rrm1_1 203 275 IPR000504 GO:0003723
Vimu6g02955 383 MobiDBLite consensus disorder prediction 332 372 - -
Vimu6g02955 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 270 IPR000504 GO:0003723
Vimu6g02955 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 179 IPR000504 GO:0003723
Vimu6g02955 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Vimu6g02955 383 FunFam UBP1-associated protein 2C 189 287 - -
Vimu6g02955 383 Gene3D - 189 287 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02955 Vimu-Chr6 26070793 26074735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02955 194 351 C2H2 Transcription Factor Family AT2G19380 28.235 1.36e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02955 K12741 - gmx:100776344 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02955 6 26070793 26074735 Vimu6g02955 6 26070793 26074735 ECH