Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02953 ATGAACGAGAACAAGGTTCATTGGGGAGGACTGATTCAACAAAGTCATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGTAATCATTACTGTCAATATTTTGATATCAGACAACCCTGGAATATGGGACCACTTGCGATGGTTGGAAGAGAAGCCACAGATCAGTTGCCAAACATTGGCCATGTCAAATCATCTGGCACCATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGATTTTCAGAATATGATTGCCAACTTGGTGTTCAATCTCAGTTATGCAAGATCAATGACTTGGAATTTCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTGACTCAAGCTATGATTTGTCAAACACTTTGCAGTCCATAGTGAAATCTCAATTCAATAATAATCAATGTCGTGTATCCCCTCAAAAGTCCAATAAAATTTCATCTGGGAATTTTCCCACCACCAAGTTCCTTCCAATTGAACAACAAAAGTTGTTCATTGATGGTGTCATCAGGGGCTCCTCATTTCCTAACAAAGGAATTCAGGATCGCACGGTTGCTCGTGGATCTTTTGATTTACCTGTTGCACATGTGAGATTTTCTTCTCAGATCGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCTACTGTTGGAAACTCTGCTTCTAATGGGGCAGCAGTCTCAAGCAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCTCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGCTTGACTATCTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGCCTAGTCAAGGCTTACAAATTAGAGAGGCACTTAAGCTTCAATTAGATGCCCAAAGGTGTCTTCACGAACAACTAGAGGTTCAGAGAAAATTGCAGCTGAGAATTGAGGAACAAGGAAGGCAACTAAAAAAAATGTTTGACCAGCAGCAAAAGACAAGTAATAACCTCTCAAATACTCAAGATTCAGGCACTGATGAGACAACAATTACTCATAAAGATGGTGAAGTTTCTGTTTCTGAAGGAGCCAACAATTCCTTCTTCACTTCCCAAGCCTCTCCAAGCCAATAA 1203 0.4065 MNENKVHWGGLIQQSHGLSGDFNSEFGNHYCQYFDIRQPWNMGPLAMVGREATDQLPNIGHVKSSGTIISRFESPASAFYAAENCMGFSEYDCQLGVQSQLCKINDLEFPLYQSPRENLFLDSANQPDSSYDLSNTLQSIVKSQFNNNQCRVSPQKSNKISSGNFPTTKFLPIEQQKLFIDGVIRGSSFPNKGIQDRTVARGSFDLPVAHVRFSSQIEKLSPTLSAGSVSTVGNSASNGAAVSSKTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPSQGLQIREALKLQLDAQRCLHEQLEVQRKLQLRIEEQGRQLKKMFDQQQKTSNNLSNTQDSGTDETTITHKDGEVSVSEGANNSFFTSQASPSQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02953 400 Pfam Myb-like DNA-binding domain 249 298 IPR001005 -
Vimu6g02953 400 MobiDBLite consensus disorder prediction 351 370 - -
Vimu6g02953 400 NCBIfam myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
Vimu6g02953 400 Gene3D - 244 303 - -
Vimu6g02953 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 243 384 IPR044848 GO:0003700
Vimu6g02953 400 MobiDBLite consensus disorder prediction 382 400 - -
Vimu6g02953 400 MobiDBLite consensus disorder prediction 351 400 - -
Vimu6g02953 400 Coils Coil 313 333 - -
Vimu6g02953 400 FunFam Myb family transcription factor 244 302 - -
Vimu6g02953 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 302 IPR017930 -
Vimu6g02953 400 SUPERFAMILY Homeodomain-like 243 299 IPR009057 -
Vimu6g02953 400 Pfam MYB-CC type transfactor, LHEQLE motif 310 357 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02953 Vimu-Chr6 26053499 26055994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02953 229 354 G2-like Transcription Factor Family AT4G28610 53.061 3.28e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu6g02953 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02953 - - gmx:100527766 619.002