Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02948 ATGGATACTCGCAAGAGGGGAAGGCTCGAACTCGGTTTCAACTCCAATGGTGGATTTAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCAAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCGTTTGGTGAGGGCTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCCCCAGCATCAAGAAATGTGGCAGCTCTGCCACCTGTACCAAATGGGTCTGCACCACCTGCTGTAAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAATGGGAACTTGGGAAGCAAATTGCTCCATCATTTGATGATCATCGAGCATTGGGGCGGACTGCAGCAGGTCGTTTTGGTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATAAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGTCAAACTGGAGCAAAACTTTCGATCAGGGAGCATGAATCGGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCATCAAAAGCTAACCCAGGTGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGCGAGAATTTTTCCAAAGGGTCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTTCCGAATTGCGTAAATCAGTATGA 885 0.4621 MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGRTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGASELRKSV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02948 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vimu6g02948 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Vimu6g02948 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Vimu6g02948 294 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Vimu6g02948 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 154 IPR045877 GO:0003729
Vimu6g02948 294 SMART kh_6 167 237 IPR004087 GO:0003676
Vimu6g02948 294 FunFam Zinc finger CCCH domain-containing protein 257 292 - -
Vimu6g02948 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vimu6g02948 294 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Vimu6g02948 294 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Vimu6g02948 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vimu6g02948 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vimu6g02948 294 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Vimu6g02948 294 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Vimu6g02948 294 Gene3D - 260 293 - -
Vimu6g02948 294 Gene3D - 94 131 - -
Vimu6g02948 294 MobiDBLite consensus disorder prediction 1 26 - -
Vimu6g02948 294 Pfam KH domain 171 233 IPR004088 GO:0003723
Vimu6g02948 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Vimu6g02948 294 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Vimu6g02948 294 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Vimu6g02948 294 CDD KH-I_AtC3H36_like 171 236 - -
Vimu6g02948 294 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Vimu6g02948 294 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02948 Vimu-Chr6 26009121 26011495 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu6g02948 KH_1 1.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02948 - - gmx:100803981 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02948 6 26009121 26011495 Vimu3g00316 3 2966398 2967066 PCT