Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02947 ATGCTTGACACTTCTGGTTGTCCGTTTGGTGAGGGCTGCCACTTCCTGCATTACGTTCCTGGTGGCTATAATGCTGTTGCCCATATAATGAATCTAACACCTGCAGCACCCCCAGCATCAAGAAATGTGGCAGCTCTGCCACCTGTACCAAATGGGTCTGCACCACCTGCTGTAAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAATGGGAACTTGGGAAGCAAATTGCTCCATCATTTGATGATCATCGAGCATTGGGGCGGACTGCAGCAGGTCGTTTTGGTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATAAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGTCAAACTGGAGCAAAACTTTCGATCAGGGAGCATGAATCGGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCATCAAAAGCTAACCCAGGTGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGCGAGAATTTTTCCAAAGGGTCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAGCTTCCGAATTGCGTAAATCAGTATGA 759 0.4664 MLDTSGCPFGEGCHFLHYVPGGYNAVAHIMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRALGRTAAGRFGGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGASELRKSV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02947 252 SUPERFAMILY CCCH zinc finger 56 88 IPR036855 GO:0046872
Vimu6g02947 252 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 116 198 IPR036612 GO:0003723
Vimu6g02947 252 Pfam RNA-binding, Nab2-type zinc finger 7 17 - -
Vimu6g02947 252 SMART c3hfinal6 57 84 IPR000571 GO:0046872
Vimu6g02947 252 SMART c3hfinal6 219 245 IPR000571 GO:0046872
Vimu6g02947 252 FunFam Zinc finger CCCH domain-containing protein 52 89 - -
Vimu6g02947 252 FunFam Zinc finger CCCH domain-containing protein 215 250 - -
Vimu6g02947 252 SUPERFAMILY CCCH zinc finger 218 249 IPR036855 GO:0046872
Vimu6g02947 252 CDD KH-I_AtC3H36_like 129 194 - -
Vimu6g02947 252 Gene3D K Homology domain, type 1 122 217 IPR036612 GO:0003723
Vimu6g02947 252 SMART kh_6 125 195 IPR004087 GO:0003676
Vimu6g02947 252 Gene3D - 52 89 - -
Vimu6g02947 252 Gene3D - 218 251 - -
Vimu6g02947 252 ProSiteProfiles Zinc finger C3H1-type profile. 219 246 IPR000571 GO:0046872
Vimu6g02947 252 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 84 IPR000571 GO:0046872
Vimu6g02947 252 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 244 IPR000571 GO:0046872
Vimu6g02947 252 ProSiteProfiles Type-1 KH domain profile. 126 190 - -
Vimu6g02947 252 PANTHER CCCH ZINC FINGER/TIS11-RELATED 4 119 IPR045877 GO:0003729
Vimu6g02947 252 ProSiteProfiles Zinc finger C3H1-type profile. 57 85 IPR000571 GO:0046872
Vimu6g02947 252 Pfam KH domain 129 191 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02947 Vimu-Chr6 25997000 25998233 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu6g02947 KH_1 8.8e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02947 - - gmx:100803981 466.077