Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02943 ATGGGAATAGAGCGCGTGCAGTGTGACTATGTCTCTCTGGTCAATGTTCTTTCTCTCTGCTTCGCTTGTGTTGTGATTTTTTATGATGAATGTGTTAATTTGATTTCTGTGTGGAAGCAGGACGAAACCTTCGAAATTGGAAAAGAGAAGTATCACGGTCAACAGTACTGCCATATTTACTTCGCACGTCTTCATTTGATGCGGACTCTCTTGTATTCACTCGCTCCTCACTGGAAACCTAATTTTCCCGTGTGCACGGTGTTGGAATTGGAAGAGGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTTAAACCTCGCGTACTTGATGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCTACATAACTTCATGCACTCGGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAACGGAAATATCATTCCGCCTGAATATGTAACAGGAATCGTGGTCGCTGTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTCCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGTGTTGGTAGCAGCACCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACGGGGCATTTAGGGGATGAGAAGGCACAACGTTTTGCATCAAAAATTGTTCAAGTTGTCTTTGCTGGAAATTTAGTTGAGATACCTCACAGAATTCTTAACGGACAGAATTTGGCTTCAGAGGATTTTGCAAGAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATTATGCCAGGACCCAGTGATCCTGCAAATTTCTCATTGCCACAACAGTCATTGCATGGATGCCTTTTCCCTGGGTCATCAACATATAATACTTTCAGATCCTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTCTTGGGACATCCGGTCAAAATGTAGATGATCTTGACAAATATTCAGATGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTAGCACCCACGGCACCTAATACTCTTGGGTGCTTTCCTTTTACTGAGAGGGATCCTTTCTTCATTGAGAGTTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTATCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGGTGAGCTCCAAATCTTGCACACTTCATTTTAACTTAGATATGGCCTTTTTATACTTGTCTAAGTATATTATTCCATTAGCACATCAGTAA 1410 0.4128 MGIERVQCDYVSLVNVLSLCFACVVIFYDECVNLISVWKQDETFEIGKEKYHGQQYCHIYFARLHLMRTLLYSLAPHWKPNFPVCTVLELEEGKECVIVGTLYKHMKLKPRVLDEYSKQKSVVPLVKLHNFMHSDDYLVLEDESGRVKLNGNIIPPEYVTGIVVAVLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLSVGSSTSNPLQFQLLIDHITGHLGDEKAQRFASKIVQVVFAGNLVEIPHRILNGQNLASEDFARMSEPIRELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHGCLFPGSSTYNTFRSCTNPHCFELDNVRFLGTSGQNVDDLDKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCFPFTERDPFFIESCPHVYFVGNQDKFETRIIKGSEGQLVRLICVPKFSETGVAVMVSSKSCTLHFNLDMAFLYLSKYIIPLAHQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02943 469 Gene3D - 193 455 - -
Vimu6g02943 469 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 39 449 IPR024826 -
Vimu6g02943 469 FunFam DNA polymerase delta subunit 2 61 184 - -
Vimu6g02943 469 CDD MPP_PolD2_C 201 449 IPR041863 -
Vimu6g02943 469 FunFam DNA polymerase delta small subunit 187 455 - -
Vimu6g02943 469 Gene3D - 61 184 - -
Vimu6g02943 469 Pfam DNA polymerase delta subunit OB-fold domain 55 181 IPR040663 -
Vimu6g02943 469 Pfam DNA polymerase alpha/epsilon subunit B 202 412 IPR007185 GO:0003677|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02943 41 449 Core DNA Replication Machinery Family AT2G42120 72.439 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02943 K02328 - gmx:100780072 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02943 6 25969903 25974237 Vimu6g02943 6 25969903 25974237 ECH