Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02941 ATGGTGGTTCCTTCGTGGCTTTCAAGTATGGTTAATTCGTGCCTAAAGCCTTTTAAGTCTCATGACAACGTGAGTGATGATGAAGATAATGCTGATCCTTCTACATCCACTGGAAACGAGCTTCTATGGCGTAGAGATATTCAGAGGCATGCTTGTGGTGAATTTTCCTTTGCTGCATGCCAGGCCAATCGGGAAATGGAAGATTATAGCCAAGTTGAGATTGGCTCTAATGCATTATTTGTTGGGGTTTATGATGGTCACGGTGGTCATGATTGTTCCCGGTTTATTAAAACTCGTCTCTTCAACAACTTAATAGCGGCTGCTAGGAATAAGGAAACTATAGACGAAGACACTCTGAGGGAAGCTTTTGCTACTACAGAGAATGATTTTATGTTAGTTGTTGAGAGGGGTTATCAGTTACAGGCGAAATTGCCAACAGTAGGTTCCTGTTGTCTGGTTGGTGTCATCTGGGGAAGAGTCCTATATATCGCCAATCTTGGAGACTCTCGTGCCATCGTTGGAACTTTAGGTAGATATAGAAAGATCACTACTGAACAGTTGACAACAGAACACAATTGCATTAGAGAGGAAATTAGAGAAGAACTTAAGGCTTTGCATCCAAATGATCCAGATATTGTAGAAGTAAGACGAGGAGCATGGCGTGTTAAAGGCATCATCCAGGTGTCCAGAACCATAGGAGATGCGTATCTGAAGATTCCAGGGCATTTGAAGCCACCTCTCACTGAACCTGTGCTGTCTGCAGAACCAACTCTAAATACAAGAATTTTGACGTCCGATGACAAATTTCTCATATTTGCATCCGATGGACTTTGGGAACACTTGACAAATCAGCAAGCAGCTGAGATTGTTCACTTGAATCCTCGAAGAGGGATTGCAAGAAGACTTATTAAGGCTGCTGTACAGGCGGCAGCTAATAGAGGGAGAATAGAATATACAGCGCTTCAGAACTTGCCGAGAGAGAGCAGACGGGTTTATCATGATGACATTACTGTGGTTGTTGTCTTCCTCGACGGTCCCTCACGTGGTAATGTGGAACATTTGTCCCTAAGAGCGTTCGAAGAGGAAGCTGGACCATCAAATTTTCAAAGTATAAACGATTTGATGTGA 1128 0.4309 MVVPSWLSSMVNSCLKPFKSHDNVSDDEDNADPSTSTGNELLWRRDIQRHACGEFSFAACQANREMEDYSQVEIGSNALFVGVYDGHGGHDCSRFIKTRLFNNLIAAARNKETIDEDTLREAFATTENDFMLVVERGYQLQAKLPTVGSCCLVGVIWGRVLYIANLGDSRAIVGTLGRYRKITTEQLTTEHNCIREEIREELKALHPNDPDIVEVRRGAWRVKGIIQVSRTIGDAYLKIPGHLKPPLTEPVLSAEPTLNTRILTSDDKFLIFASDGLWEHLTNQQAAEIVHLNPRRGIARRLIKAAVQAAANRGRIEYTALQNLPRESRRVYHDDITVVVVFLDGPSRGNVEHLSLRAFEEEAGPSNFQSINDLM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02941 375 Gene3D - 20 348 IPR036457 -
Vimu6g02941 375 ProSiteProfiles PPM-type phosphatase domain profile. 54 343 IPR001932 -
Vimu6g02941 375 Pfam Protein phosphatase 2C 77 312 IPR001932 -
Vimu6g02941 375 ProSitePatterns PPM-type phosphatase domain signature. 80 88 IPR000222 GO:0043169
Vimu6g02941 375 PANTHER PROTEIN PHOSPHATASE 36 341 IPR015655 GO:0004722|GO:0006470
Vimu6g02941 375 SUPERFAMILY PP2C-like 59 346 IPR036457 -
Vimu6g02941 375 CDD PP2Cc 61 343 IPR001932 -
Vimu6g02941 375 SMART PP2C_4 48 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02941 Vimu-Chr6 25959348 25961058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02941 5 368 PP2C-type Phosphatase Gene Family AT5G06750 49.482 2.84e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02941 K01102 - gmx:100806476 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02941 6 25959348 25961058 Vimu6g02941 6 25959348 25961058 ECH
Vimu6g02941 6 25959348 25961058 Vimu11g03679 11 58763778 58771516 ECH
Vimu6g02941 6 25959348 25961058 Vimu3g00309 3 2909863 2913213 PCT