Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02940 ATGGCCGATGCTGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTGAAGGCTGGTTTTGCCGGAGATGATGCTCCGAGGGCGGTGTTCCCTAGCATTGTAGGGCGTCCACGTCACACTGGAGTGATGGTTGGGATGGGACAGAAGGATGCGTATGTTGGGGACGAGGCTCAATCGAAGAGGGGTATTTTGACTCTGAAATACCCTATTGAGCATGGGATTGTGAGTAATTGGGACGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCTCCTGAAGAACACCCTGTGCTTCTTACCGAGGCACCGCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATCATGTTTGAGACCTTCAACACTCCTGCTATGTATGTCGCCATCCAAGCTGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGGTAACCGATCTTCATCCACCTTTCTTGATTCTTGTTTATTTGGTATTGTTCTGGACTCCGGAGATGGTGTCAGTCACACGGTTCCTATTTACGAAGGCTATGCCCTTCCACATGCAATCTTGCGTTTGGACCTTGCCGGGCGTGATCTCACTGATGCCCTTATGAAAATCCTGACTGAGCGTGGTTACTCTTTCACCACATCTGCAGAGCGGGAAATTGTGAGGGACATGAAGGAGAAACTGGCCTATATTGCTCTTGATTACGAGCAGGAATTGGAAACTGCCAAGACTAGCTCAGCCGTTGAAAAGAGCTATGAGCTTCCTGATGGGCAGGTGATCACTATTGGTGCTGAGCGATTCCGGTGCCCCGAAGTTCTGTTCCAGCCATCCATGATTGGGATGGAATCTCCTGGCATCCACGAGACAACATATAACTCTATCATGAAGTGTGATGTCGACATCAGGAAGGATCTATACGGTAACATTGTCTTGAGTGGTGGTTCCACAATGTTCCCAGGCATTGCTGATAGGATGAGCAAGGAGATTACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTTGTCGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCCCTCAGCACCTTCCAACAGATGTGGATTGCGAAGGCTGAGTATGATGAATCTGGACCATCAATCGTACACAGGAAATGCTTCTAA 1176 0.483 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGNRSSSTFLDSCLFGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02940 391 FunFam Putative actin-related protein 5 355 383 - -
Vimu6g02940 391 CDD NBD_sugar-kinase_HSP70_actin 10 197 - -
Vimu6g02940 391 PANTHER ACTIN 9 384 IPR004000 -
Vimu6g02940 391 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vimu6g02940 391 FunFam Actin, alpha skeletal muscle 3 161 - -
Vimu6g02940 391 SUPERFAMILY Actin-like ATPase domain 166 391 IPR043129 -
Vimu6g02940 391 SUPERFAMILY Actin-like ATPase domain 5 148 IPR043129 -
Vimu6g02940 391 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vimu6g02940 391 PRINTS Actin signature 63 85 IPR004000 -
Vimu6g02940 391 PRINTS Actin signature 117 130 IPR004000 -
Vimu6g02940 391 PRINTS Actin signature 51 62 IPR004000 -
Vimu6g02940 391 PRINTS Actin signature 252 268 IPR004000 -
Vimu6g02940 391 PRINTS Actin signature 28 37 IPR004000 -
Vimu6g02940 391 Gene3D Actin; Chain A, domain 4 196 287 - -
Vimu6g02940 391 SMART actin_3 7 391 IPR004000 -
Vimu6g02940 391 Gene3D - 140 354 - -
Vimu6g02940 391 ProSitePatterns Actins signature 2. 372 380 IPR004001 -
Vimu6g02940 391 Gene3D - 10 385 - -
Vimu6g02940 391 FunFam Major actin 274 354 - -
Vimu6g02940 391 Pfam Actin 5 391 IPR004000 -
Vimu6g02940 391 FunFam Actin, muscle 196 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02940 Vimu-Chr6 25954989 25957203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02940 1 391 Cytoskeleton Gene Families AT5G09810 92.839 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02940 K10355 - gmx:100807341 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02940 6 25954989 25957203 Vimu6g02940 6 25954989 25957203 ECH
Vimu6g02940 6 25954989 25957203 Vimu3g00306 3 2902652 2904905 PCT