Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02923 ATGGAGTTGGCTTTGAGCTTAGGCCACACAAACAATGCTTCAATGGAGTTTTCCTCAGATCCACCCCTTCAGCTTCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATGCATGGAAGACACACCGGTGAGGGCGCTTGATGACACGGACGACGGTGCTGCACTTTCGTCCCCCAACAACAGTGCAGTATCGTCATTTCAGATGGACTTTTGCAGAAACAGTAGAAAGTTTTTTGAGGGTGACAGCGAAGAAGACGAAAACGGGTCAACAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTTCTAGAAGACAGTTTCAAAGAACACGCCACTCTCAATCCCAAACAGAAACTCGTTCTTGCAAAAGAGTTAAATCTGCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAGTCTGTCAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCATGCAACTTCCGGCTACGACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCTCCTCCGCCGCTGCTTCCGCCACCAACAATGATACTGTTTCTCTGAACAAGCCCAGAATATTGTCAGGCCCACACGCAGCAGGCCCACATGACCCGTCGGAGTGCTTCTTCTGA 771 0.4929 MELALSLGHTNNASMEFSSDPPLQLHHLLPSTPVLPSPRLPIPWLSHACMEDTPVRALDDTDDGAALSSPNNSAVSSFQMDFCRNSRKFFEGDSEEDENGSTRKKLRLSKTQSAFLEDSFKEHATLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLSEENKRLQKELQELRALKTCEPFFMQLPATTLTMCPSCERVATTSSAAASATNNDTVSLNKPRILSGPHAAGPHDPSECFF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02923 256 Coils Coil 165 192 - -
Vimu6g02923 256 Pfam Homeobox associated leucine zipper 159 193 IPR003106 GO:0006355|GO:0043565
Vimu6g02923 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 3 229 - -
Vimu6g02923 256 Gene3D - 107 157 - -
Vimu6g02923 256 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Vimu6g02923 256 MobiDBLite consensus disorder prediction 234 256 - -
Vimu6g02923 256 Pfam Homeodomain 103 157 IPR001356 GO:0003677
Vimu6g02923 256 SMART HOX_1 101 163 IPR001356 GO:0003677
Vimu6g02923 256 SUPERFAMILY Homeodomain-like 96 160 IPR009057 -
Vimu6g02923 256 FunFam Homeobox-leucine zipper protein HAT22 107 153 - -
Vimu6g02923 256 CDD homeodomain 103 160 IPR001356 GO:0003677
Vimu6g02923 256 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Vimu6g02923 256 CDD bZIP 152 191 - -
Vimu6g02923 256 SMART halz 159 202 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02923 Vimu-Chr6 25822295 25823315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02923 93 248 Homeobox Transcription Factor Family AT4G37790 61.146 3.73e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu6g02923 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02923 K09338 - gmx:100810885 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02923 6 25822295 25823315 Vimu6g02923 6 25822295 25823315 ECH
Vimu6g02923 6 25822295 25823315 Vimu3g00292 3 2741476 2742598 PCT