Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02919 ATGCTTGTTTCTCGCCGCAACTTTCGCCAACAAATCGACCTTCCGGAGCTTAGCCGCCACCTCGCCATCATCTGCCGGAGTCACCATAGCAGCCTCGTCAAGCTCTTCGGTGCCTCCGTCTCCAGCAACGTCATCTTTCTCGTTTACGAATTTGTCCCCGACGCCAGCCTCACCCACTGTCTCCATAACCGCCGGAACTCTAGCTACATTGATCTCGTCACGTGGATCTCTAGGATGCAGATCGCCTCCGACGTCGCTCATGGCCTCGATTACATCCACAATTTCTTCGGTTCAGACTCCGGTTCGGGATCCGTTCTAGTTTCGTGCAATGTGTTGGTGAGGAAAATAAGAAAAATGGGAAGAAGGTTTGTGCTTGAAGAGTTTACGGAGAGAGTTTGTAGAGGAGAAAAGTTGGAGTAG 420 0.5143 MLVSRRNFRQQIDLPELSRHLAIICRSHHSSLVKLFGASVSSNVIFLVYEFVPDASLTHCLHNRRNSSYIDLVTWISRMQIASDVAHGLDYIHNFFGSDSGSGSVLVSCNVLVRKIRKMGRRFVLEEFTERVCRGEKLE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02919 139 Pfam Protein tyrosine and serine/threonine kinase 14 94 IPR001245 GO:0004672|GO:0006468
Vimu6g02919 139 Gene3D Transferase(Phosphotransferase) domain 1 3 104 - -
Vimu6g02919 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02919 139 PANTHER OS09G0572100 PROTEIN 2 120 - -
Vimu6g02919 139 SUPERFAMILY Protein kinase-like (PK-like) 15 96 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02919 Vimu-Chr6 25794269 25794688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02919 16 136 Receptor kinase-like Gene Family AT1G51940 32.231 1.40e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu6g02919 PK_Tyr_Ser-Thr 3.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02919 - - gmx:100820374 162.54