Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02913 ATGGCTCCTGGGAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACAAAATCTAGTGTTGGGTTGAATGGAAAGAACGGAGTTAGTTCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAACTTAATGTATCCTCCAATTCACCAGTTCAGATTCCCTTCTCACCCTGCAAAAGAAAGGTTGGGAATGAGAGTTCCTGATTCTGCCTATGTCTATGGATATATGGTTCATTTGCTTATGCTAAGGACAGTGGATTTACTTGAGAATGAAATCTCGCTCAAGTGGATTTCCAACACACCCTTGTTGTTGGACCTTTACACTGAAGGCTATATGCATCTAATCCTCATGTACTATTCTGCCTGTTCTACCGAGAAGATGTGTCCAAATGGCCATACATTATGTTGCCATTGTAAAGTTGAAGTCCACAATATCTGCCCATCTTGCCATCATGAACTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCGTTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCTTACTATACTAAGCTCAAGCACGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCAACTCTCGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCTCATGAAGTTGAAAATGCGACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTTCAGCTTGGCTCAGCTCCAGTGTATATGGCTTTTTTGCGATTTATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGGATTCCAAGGAGCATTCGTGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTGGCGCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTGAAGTTGAGAATCAGTGGTCGTATATGGAGAGAAGATTGA 1161 0.4117 MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSVGLNGKNGVSSNNGVYELLGCSVCKNLMYPPIHQFRFPSHPAKERLGMRVPDSAYVYGYMVHLLMLRTVDLLENEISLKWISNTPLLLDLYTEGYMHLILMYYSACSTEKMCPNGHTLCCHCKVEVHNICPSCHHELGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRISGRIWRED 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02913 386 MobiDBLite consensus disorder prediction 22 45 - -
Vimu6g02913 386 FunFam E3 ubiquitin-protein ligase SINAT5-like 247 379 - -
Vimu6g02913 386 SUPERFAMILY TRAF domain-like 191 382 - -
Vimu6g02913 386 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 384 - -
Vimu6g02913 386 MobiDBLite consensus disorder prediction 28 45 - -
Vimu6g02913 386 Pfam Seven in absentia protein family 180 379 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu6g02913 386 ProSiteProfiles Zinc finger SIAH-type profile. 191 251 IPR013010 GO:0008270
Vimu6g02913 386 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 246 380 IPR008974 GO:0005515
Vimu6g02913 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Vimu6g02913 386 FunFam E3 ubiquitin-protein ligase SINAT3 188 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02913 Vimu-Chr6 25757126 25759460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02913 1 74 C3H Transcription Factor Family AT2G41980 60.811 1.78e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02913 K04506 - gmx:100813966 500.36