Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02912 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGCCCCCCTGCAAGCCAATACACTGCACCACCTAGGGGTAGCACATACGGCGGCGGAGGAGGAAGTGGTAGAGGAGAGCCTAGGGGTGTTGCAAGGAGTGCCCCACAGAAAGTGTTGCCGATTGAGATACCCTCTATTCCATTGGAAGAGTTAAATAGGTTAACAGGAAACTTTGGCACAAAGGCTTTCATCGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGCACTCAGTTATCGGTTGTCTCAAGACTGAAGCATGACAACTTTGTTGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAAGCCTTGGTTCTTTGCATGACGTATTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTTCTAAGTTGGAACCAAAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGTGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGGCCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGTCTACACTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCGGAGTATGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCGCCAAAGGCTATTGCCAAGTTGGCAGCAGTGGCAGCGCTTTGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACGATTGTTGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCACCTGGTCCTGAAACTCAAGCTTGA 963 0.4673 MLCCGGAEEESSGPPASQYTAPPRGSTYGGGGGSGRGEPRGVARSAPQKVLPIEIPSIPLEELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGTQLSVVSRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPETQA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02912 320 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 38 252 - -
Vimu6g02912 320 MobiDBLite consensus disorder prediction 1 48 - -
Vimu6g02912 320 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vimu6g02912 320 Gene3D Phosphorylase Kinase; domain 1 43 146 - -
Vimu6g02912 320 ProSitePatterns Tyrosine protein kinases specific active-site signature. 198 210 IPR008266 GO:0004672|GO:0006468
Vimu6g02912 320 SUPERFAMILY Protein kinase-like (PK-like) 47 304 IPR011009 -
Vimu6g02912 320 FunFam probable protein kinase At2g41970 43 146 - -
Vimu6g02912 320 SMART tyrkin_6 70 305 IPR020635 GO:0004713|GO:0006468
Vimu6g02912 320 ProSiteProfiles Protein kinase domain profile. 70 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02912 320 Pfam Protein tyrosine and serine/threonine kinase 74 251 IPR001245 GO:0004672|GO:0006468
Vimu6g02912 320 Gene3D Transferase(Phosphotransferase) domain 1 254 314 - -
Vimu6g02912 320 Gene3D Transferase(Phosphotransferase) domain 1 148 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02912 Vimu-Chr6 25752752 25755220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02912 60 312 Receptor kinase-like Gene Family AT3G58690 36.027 6.13e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vimu6g02912 PK_Tyr_Ser-Thr 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02912 - - gmx:100786291 546.969