Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02905 ATGAACGTCGACTCTTTCTCTCAGCTCCCCTTCCTCCGTCCCTCTCCTTCCAAAGATAAAGACAAATCCATTCGTCTCTTTGGTCAAGATTTCTCTCACGCCTCCAAAACCACCCATACATCCTCCCACAACCACCACGACACCATCAACACACAGAACGCCGAGCCCACCCGCAGATTCGAGTGCCATTACTGTTGCAGAAACTTTCCTACTTCTCAAGCCTTAGGCGGCCACCAAAACGCCCACAAACGAGAACGCCAACACGCCAAACGACACCTCCACTCAGCCATGCTCGACACCACCCTCTCCGATCCTACCACCTACTCTTTCACCAACCCCACCTTCACTTCCTCCACAATCTCCTATCCATCTCACACAGATTGGGATTCTAACGCTGCTCGAGCAAGGTTCTACGGAAGCTCCTATTCTCATCAGCTTCAACCCATCAACGGAAGCCCCTTGGGCATGTGGCGAATCCCCAACACCACTGCAGCCACTCACACCCACCAGAGTAACCCTATTTTACACCATCAATGTGCTTTGCCTTTGCTTTCTGATCAGGAAATGGTGAGGGCGAGGATGGGTCCCTCCCCCTCTGGCTCGCAGCACCGGTTTGCTTATGACCTCAAACCCAGCGTAAACGACCATGTGAGTTTGGATCTTCGTCTGTAA 672 0.5238 MNVDSFSQLPFLRPSPSKDKDKSIRLFGQDFSHASKTTHTSSHNHHDTINTQNAEPTRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSAMLDTTLSDPTTYSFTNPTFTSSTISYPSHTDWDSNAARARFYGSSYSHQLQPINGSPLGMWRIPNTTAATHTHQSNPILHHQCALPLLSDQEMVRARMGPSPSGSQHRFAYDLKPSVNDHVSLDLRL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02905 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Vimu6g02905 223 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vimu6g02905 223 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g02905 223 SUPERFAMILY beta-beta-alpha zinc fingers 57 88 IPR036236 -
Vimu6g02905 223 PANTHER ZINC FINGER PROTEIN GIS 1 223 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02905 Vimu-Chr6 25619520 25620191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02905 1 223 C2H2 Transcription Factor Family AT3G58070 38.521 8.26e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02905 - - var:108328492 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02905 6 25619520 25620191 Vimu6g02905 6 25619520 25620191 ECH
Vimu6g02905 6 25619520 25620191 Vimu3g00284 3 2611644 2612477 PCT