Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02882 ATGGAGGACGAGGTGGCTTCCCCTGTTGGTGTTCTTGAGGATTATTTTTTCAAGAGTTCAGAATCAGAAACTAGTTCTTCCAAAGAACCTGGTACTACGGATTCTGATAAGTCAAAGCCCGGTTCTAGATGGCGTGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGAAGCCGGTGGCCACATTGTATCCTCTAAGTGTCCTCAAACTCTCCAGAAGATTCACCAGTGGCATGAGGGAGACTGTGATAGATGCTTCTTCCTTTCATAGTTCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCGCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAGCTGGTGGCGATTAAACGATTGGCACGTGGAGCAGAAAACGAAACTACAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCATCCCAATACTGCTAAATTAGTTGGATATGGAGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAGCTACCATGGCCTGTTAGGCAGAAAATAGCATTAGGAACAGCCAAGGGTATATTGTATCTTCACGAAGGCTGTCAAAGAAGAATTATTCACAGAGATATAAAAGCATCAAATATCTTGCTTACTGAGGACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCACCACACCGTTTCAAAAATCGAAGGGACTTTTGGTTACCTTGCTCCAGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTGTTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACTGGGCGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAGAACCTTTTCTGAAAAAGAATAAAATCAGGGAGCTGATTGATCCTTCACTTGATGATGTTTTTGACAGTCGCCAGATTAAAATTATGCTTTTCACAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCTATGAACCAGGCACGTTTTCTTGTTGTACAGCTTCTGAATGGTAACGTTAGCTGCTCTAGCTTCACCAAGAAATCTCAACTTCCATTCACTCGAAGGGACTTTCTAGAAGAGTTCATTGATTCTGATTAA 1224 0.424 MEDEVASPVGVLEDYFFKSSESETSSSKEPGTTDSDKSKPGSRWRAFLQLLRVKSKKPVATLYPLSVLKLSRRFTSGMRETVIDASSFHSSPWKIFTHHEIQIATNYFAQENCIGKGGYAEVYKGCLPNGQLVAIKRLARGAENETTGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWPVRQKIALGTAKGILYLHEGCQRRIIHRDIKASNILLTEDFEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAEPFLKKNKIRELIDPSLDDVFDSRQIKIMLFTASLCIQQSSIRRPSMNQARFLVVQLLNGNVSCSSFTKKSQLPFTRRDFLEEFIDSD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02882 407 Gene3D Transferase(Phosphotransferase) domain 1 185 387 - -
Vimu6g02882 407 SMART serkin_6 108 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02882 407 SUPERFAMILY Protein kinase-like (PK-like) 88 370 IPR011009 -
Vimu6g02882 407 PANTHER OS08G0249100 PROTEIN 7 402 IPR046958 -
Vimu6g02882 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vimu6g02882 407 Pfam Protein kinase domain 110 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02882 407 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 78 182 - -
Vimu6g02882 407 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 185 391 - -
Vimu6g02882 407 ProSiteProfiles Protein kinase domain profile. 108 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02882 407 Gene3D Phosphorylase Kinase; domain 1 69 182 - -
Vimu6g02882 407 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Vimu6g02882 407 MobiDBLite consensus disorder prediction 17 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02882 Vimu-Chr6 25414806 25417847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02882 96 379 Receptor kinase-like Gene Family AT1G53420 42.123 7.81e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu6g02882 Pkinase 4.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02882 - - gmx:100818913 674.47