Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02881 ATGTCCCTTCCCTTTTATTTCTCCCTCTGTTTTGTTTTTACTCTTTCATTTCTTCCTCCGCCTCCTTCTCTGGCCGCCAACGACACCGTTCCCTGTCCCTTGAACATCACGGTGCTCCGCGTGGTGGGCGGCGGCGCCCGGCCCTCCTTCGACTCCGGCACTCGGTGCCATTACATTTTGCAGGCGCTCCACCTCCTCCAGGCGGATTACCTCCGCCGCAGCAACCTCTTCGTGCCGCCGCTCAACGCCTCCGAGTCCTGCTGGACCTCCTTCCAGTCCTTCATCAACGAATTCGACCCGAACATCGATATACGATCCTCCTGCGGCCTCAAAACAGAGTGGATCTCCCAGGGCTGCATGAACATCACCACCAAACAGCAGTTCGAAGACACCGCCCCCACCGCCGCAATCCAGGCCGTCCAAGGCGACTGCAACCAGTCCCTCGATAACAACGCCCCATGCGCCCTCTGCACCACCAAAATCTCCAGCCTTCTCTCCTACTTTACCGGCCCAACCGTCGGGAACGTCTCCGATTGCCGAGCCTATACTTCCATCTACGCCGCCTCTCTCTCTGACCAGTATGGTGCCACTGACCCCGGAACCGCCAAGTGCCTCTTCGGCCTCGATTTTTCCTCCCCCGGTTCCAGCGGTAAGCGCCGAACCATCATTATCGCAGTTTCCGTTTTCTGTTTTGTTGCTTTGCTTGTTCTTGCTGGGGTTTGGACTTACACTAGATTCAACAAGAGGAAGGAGTTTGCGGGAGGGAAGGGTGTTGGAAAATCTGAACTTGGTTTGGGTTTGGGTTCTGGGTTGGATTCCATGAACCAGAGTACGACTTTGATTAGGTTCACTTTTGATGAGATTAAGAAGGCTACTAGGAACTTCTCCAGGGATAACATGATCGGGAGTGGGGGTTATGGGAACGTTTACAAAGGAATGTTGCTGGATGGTAGTCCGGTTGCTTTTAAAAGGTTCAAGAATTGTTCTGTTGCCGGGGATGCTGGTTTCACTCACGAAGTTGAGGTTATTGCGAGTGTTCGCCATGTGAACCTTGTTACCTTAAGAGGTTATTGTACTGCCACCACCAATTTAGAGGGGCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTACGATCATTTATTTGGTTCTTCCAAGAAGAATCTCAGTTGGCCTATTCGTCAAAAGATTGCTCTGGGGACAGCTAGAGGATTGGCTTATTTGCATTACGGGGCTCAACCTTCCATCATTCATAGAGATATTAAAGCTAGTAACATACTTCTGGACCATAAGTTTGAGGCCAAGGTGGCGGATTTCGGGTTGGCGAAGTTCAACCCAGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGGACTATGGGGTATGTTGCTCCTGAGTATGCCTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGTGTGGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGAACGATGATGGGCAACCCTCTGCACTCACTGACTTTGCTTGGTCTTTGGTTAGAAACGGTAGTGCTCTGGATGTTGTTGAAGATGGCATTCCAGAGCCTGGTCTACCAGAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGTTGTGTTCTCATCCACAGCTCTATGCTAGACCAACAATGGACCAGGTTGTTAAAATGCTGGAGACAGATGAATCGGTTCCTTCGTTAATGGATAGGCCAATTCCTTTTATTGCTGGGAGGATTGACATTGAAAAATCTGCTCTCAGTAACTCGGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCATATACACTACAAAATCAACGCAAATCTATTTGTAAAGAAGACGAGGAAGAAGAAGAAGGAAGTTCAGTGGCTGATACTGTTACCACAGAATGA 1926 0.4948 MSLPFYFSLCFVFTLSFLPPPPSLAANDTVPCPLNITVLRVVGGGARPSFDSGTRCHYILQALHLLQADYLRRSNLFVPPLNASESCWTSFQSFINEFDPNIDIRSSCGLKTEWISQGCMNITTKQQFEDTAPTAAIQAVQGDCNQSLDNNAPCALCTTKISSLLSYFTGPTVGNVSDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSPGSSGKRRTIIIAVSVFCFVALLVLAGVWTYTRFNKRKEFAGGKGVGKSELGLGLGSGLDSMNQSTTLIRFTFDEIKKATRNFSRDNMIGSGGYGNVYKGMLLDGSPVAFKRFKNCSVAGDAGFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGKKALQTNDDGQPSALTDFAWSLVRNGSALDVVEDGIPEPGLPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDESVPSLMDRPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQNQRKSICKEDEEEEEGSSVADTVTTE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02881 641 PANTHER OS01G0750732 PROTEIN 124 622 - -
Vimu6g02881 641 Gene3D Phosphorylase Kinase; domain 1 269 374 - -
Vimu6g02881 641 Gene3D Transferase(Phosphotransferase) domain 1 376 578 - -
Vimu6g02881 641 MobiDBLite consensus disorder prediction 618 641 - -
Vimu6g02881 641 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 259 374 - -
Vimu6g02881 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vimu6g02881 641 Pfam Protein kinase domain 296 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02881 641 Pfam SPARK 28 176 IPR043891 -
Vimu6g02881 641 CDD STKc_IRAK 301 570 - -
Vimu6g02881 641 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 376 577 - -
Vimu6g02881 641 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vimu6g02881 641 SMART serkin_6 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02881 641 ProSiteProfiles Protein kinase domain profile. 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02881 641 SUPERFAMILY Protein kinase-like (PK-like) 272 570 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02881 Vimu-Chr6 25406812 25408737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02881 11 614 Receptor kinase-like Gene Family AT2G48010 60.591 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu6g02881 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02881 - - gmx:100819453 1086.63