Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02879 ATGCCACTGTTCCGGATCCTTGTCATCATCTTCCTCACTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACTTCGACCTCGTACGTTCGAGACCCTCATCGGACTCCAAGACACGGTGTCGTTACATCCTCCAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTTCCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGACCGCTCTCCAAAATCGCACCCACCAATACGACATTCGTTCCTCCTGCAACCTCCCTTCCTCTTCCTTTTCCCTCTCCTGCAACAACATCACCAACCAATCCCAATTCGAGGACCTTTTGCCTCTCTCAGCCAAACAAGTACGGAATACTTGTAACCATTCTCTCAACAGTCTCGCATCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGATTCCCATCTCACCCACAATACCACTGATTGCAAGATTATTGCTTCTATCTATGCTGCTTCCTTCTCCAACCTGCAAGACCCCACAACTGCTGATTGTCTGTTCAACTTTAGCTTTCCTTCTTCGGTTTCAACTAGTAAGCGTCGAAACATTCTTATTGCGGCTTTTTGTGTGCTGGCCTTCTTCTTGTTGGTCTTTGGTGTTTTTTGGGCTTACTTTAGATTGAAGCAGAAGAATAAGGCTATTTGTAAAACTGAGATGGGTTTGGGTTCTGGGTTGTATTCTGTGAACCAGACTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCGGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTATAGAGGGATGCTGGTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAACTGTTCTGTTGCTGGGGATGCTAGCTTCACCCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGGCTTAAGAGGATATTGTACTGCTACAACTAACTTAGAGGTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGTATGTATTGGTTGCTATACTATGTTGTCATCCTCAACTACATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGACGGAGGAATCAGTGTCCTCATTATCTTGTGTTGCTGGGAGGATTGATACTGAGAAATCTGTGCAGTAA 1242 0.4525 MPLFRILVIIFLTLPALSLSDSCPLNFDLVRSRPSSDSKTRCRYILQSLRILQSDYLHRTGSFPPSNASFSCWTALQNRTHQYDIRSSCNLPSSSFSLSCNNITNQSQFEDLLPLSAKQVRNTCNHSLNSLASCALCTKALSNLDSHLTHNTTDCKIIASIYAASFSNLQDPTTADCLFNFSFPSSVSTSKRRNILIAAFCVLAFFLLVFGVFWAYFRLKQKNKAICKTEMGLGSGLYSVNQTTTLIRFTFDEIKKATRNFAGDNIIGKGAYGNVYRGMLVDGTQVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVGLRGYCTATTNLEVTDFAWSLVRNGRALDVIEDGMPELGPIEILEKYVLVAILCCHPQLHARPTMDQVVKMLETEESVSSLSCVAGRIDTEKSVQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02879 413 Pfam Protein tyrosine and serine/threonine kinase 265 329 IPR001245 GO:0004672|GO:0006468
Vimu6g02879 413 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 332 396 - -
Vimu6g02879 413 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Vimu6g02879 413 SUPERFAMILY Protein kinase-like (PK-like) 238 328 IPR011009 -
Vimu6g02879 413 Gene3D Phosphorylase Kinase; domain 1 229 331 - -
Vimu6g02879 413 ProSiteProfiles Protein kinase domain profile. 261 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02879 413 SMART tyrkin_6 261 390 IPR020635 GO:0004713|GO:0006468
Vimu6g02879 413 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 220 335 - -
Vimu6g02879 413 Pfam SPARK 20 152 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02879 Vimu-Chr6 25398351 25400027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02879 330 394 Receptor kinase-like Gene Family AT2G48010 75.385 1.09e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu6g02879 SPARK 9.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02879 - - vun:114194863 508.064