Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02864 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCGTTAGCCTCTCAAATCCATTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAATGACTCCACCACCTCCTCCTCCTCCTATTCTTTCAATTCCAATCCATGGTGGAGATCCATGGCCACTTTCACCAGAACGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACGCTAACCGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCCAAGGCTGTTGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCGACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAAATGGATGGTGGTATACTTGTTGTCTCTGCACCTGATGGACCAATGCCTCAAACAAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAGATGGAGCTACGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCCCTGTCTGCTTTACAAGGTACAAATGACGAGATTGGAAGACAAGCGATTCTAAAATTAATGGATGCTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGGCGAGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCGGGTGACAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCAACGTGGTCAGGTGATTGCAAAGCCAGGTTCTATAAAAACATACAAGAGATTTGAGGCTGAGATATATGTACTCACAAAGGATGAGGGTGGCCGACACACCGCATTCTTCTCTAACTATAGACCTCAGTTTTACTTGAGGACAGCTGATATCACTGGAAAGGTAGAGTTGCCTGAAAATGTTAAGATGGTTATGCCCGGAGACAACGTTACAGCTGTGTTTGAATTGATTTCAGCCGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAG 1356 0.4683 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPNDSTTSSSSYSFNSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSIKTYKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISAVPLEAGQRFALREGGRTVGAGVVSKVLS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02864 451 NCBIfam elongation factor Tu 55 450 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vimu6g02864 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 281 IPR027417 -
Vimu6g02864 451 CDD EF_Tu 64 258 IPR041709 -
Vimu6g02864 451 Gene3D Translation factors 261 391 - -
Vimu6g02864 451 Gene3D - 55 258 IPR027417 -
Vimu6g02864 451 PRINTS GTP-binding elongation factor signature 67 80 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 PRINTS GTP-binding elongation factor signature 131 141 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 PRINTS GTP-binding elongation factor signature 111 119 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 PRINTS GTP-binding elongation factor signature 147 158 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 MobiDBLite consensus disorder prediction 27 47 - -
Vimu6g02864 451 FunFam Elongation factor Tu 261 391 - -
Vimu6g02864 451 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 360 450 IPR009001 -
Vimu6g02864 451 CDD EFTU_II 266 354 IPR033720 -
Vimu6g02864 451 Pfam Elongation factor Tu GTP binding domain 63 256 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 CDD EFTU_III 357 446 - -
Vimu6g02864 451 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 63 259 IPR000795 GO:0003924|GO:0005525
Vimu6g02864 451 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 104 119 IPR031157 -
Vimu6g02864 451 PANTHER ELONGATION FACTOR TU-RELATED 58 450 - -
Vimu6g02864 451 Pfam Elongation factor Tu C-terminal domain 355 449 IPR004160 -
Vimu6g02864 451 Gene3D Translation factors 395 450 - -
Vimu6g02864 451 SUPERFAMILY Translation proteins 260 356 IPR009000 -
Vimu6g02864 451 Hamap Elongation factor Tu [tuf]. 54 451 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vimu6g02864 451 FunFam Elongation factor Tu 54 258 - -
Vimu6g02864 451 Pfam Elongation factor Tu domain 2 280 350 IPR004161 GO:0005525
Vimu6g02864 451 NCBIfam small GTP-binding protein domain 66 202 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02864 Vimu-Chr6 25313506 25317474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02864 61 449 Eukaryotic Initiation Factors Gene Family AT5G60390 30.822 2.37e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02864 K02358 - gmx:100776891 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02864 6 25313506 25317474 Vimu6g02864 6 25313506 25317474 ECH