Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02849 ATGACGATGTCAGTGATGTGTAGACCAACACATCAGGCTCTGAAAAACGTTCCTTCCGGTGGACAAAGCCAGATGATGAGGCCAAAAGACAAGGTGGTGCTGGTGATGGGAGCAACGGGGAGCGGAAAAACCAGGTTGTCGGTGGACTTAGCAACATGTTTTCCCTCAGAAATCATAAACTCTGACAAAATGCAAGTGTACGAAGGGCTTGAGATTGTCACCAACAAGGCCACCAAAGAGGAGCAGCGTGGGGTCCCACATCACCTCCTGGGGACGCAGAACCCCGACACGGAGTTCACGGCCTCCGACTTCTGCGACGCCGCTTCACGCGCCATCGAGTCCATAACGCGCCGCGACAAGGTTCCGATAGTGGTGGGAGGATCCAACTCGTACATGGAGGCGCTGGTGGATAGGTTCGGGCCGCGGTTCGAGTGGTGCTTTCTGTGGGTCGACGTGTCCGTGCCAGTGCTCTATTCCTACGTGGGGCAGCGCGTGGACCACATGCTCCGATGTGGAATGGTGAACGAGTTGAGACCGTTTTTCAACATGAACGGCGATTACTCGCGTGGGATAAGGAAGGCAATTGGGGTTTCTGAATTCCACCCGTACTTCCGGCGGGAGGCGACGGCGAGCGGTGAGACGAGGATGAGGCTGCTGCAGGAGGCGGTGAGGGACGTGAAGGGGAACACGTGCGACTTGGCACGCAAGCAACTTGGGAGAATCCACATGCTCCGAAGTGATGGGTGGAAGATCCACCGCATTTGCGCCACGCCCGTGTTTCAGAAACGTGGCCGCGACGCCAGCGAGGCTTGGAACAACATGGTGGCGCAACCCTGTGCCTCCATTGTTTCTCAGTTTCTCTACAGTTCTGCCAATTCTGCTTCTGGGAGAGTCGCACCTTCTATGCAACCAAACTAA 918 0.5621 MTMSVMCRPTHQALKNVPSGGQSQMMRPKDKVVLVMGATGSGKTRLSVDLATCFPSEIINSDKMQVYEGLEIVTNKATKEEQRGVPHHLLGTQNPDTEFTASDFCDAASRAIESITRRDKVPIVVGGSNSYMEALVDRFGPRFEWCFLWVDVSVPVLYSYVGQRVDHMLRCGMVNELRPFFNMNGDYSRGIRKAIGVSEFHPYFRREATASGETRMRLLQEAVRDVKGNTCDLARKQLGRIHMLRSDGWKIHRICATPVFQKRGRDASEAWNNMVAQPCASIVSQFLYSSANSASGRVAPSMQPN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02849 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 148 IPR027417 -
Vimu6g02849 305 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 154 251 - -
Vimu6g02849 305 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 29 287 IPR039657 -
Vimu6g02849 305 Gene3D - 29 287 IPR027417 -
Vimu6g02849 305 Pfam IPP transferase 65 141 - -
Vimu6g02849 305 Pfam IPP transferase 142 238 - -
Vimu6g02849 305 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g02849 305 MobiDBLite consensus disorder prediction 1 25 - -
Vimu6g02849 305 FunFam Adenylate isopentenyltransferase 5, chloroplastic 154 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02849 Vimu-Chr6 25182366 25183735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02849 142 294 C2H2 Transcription Factor Family AT2G27760 30.939 9.19e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02849 K10760 - gmx:100777757 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02849 6 25182366 25183735 Vimu6g02849 6 25182366 25183735 ECH
Vimu6g02849 6 25182366 25183735 Vimu3g01662 3 30740122 30741468 PCT