Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02846 ATGCCTTACCCTCCATCGACAAAAGCAAAAGTTTGCCTCGCTGATCCTCCAGAGTCACCCCAATATCAAAGAATTGCTCAATTTTCGCAGGCCATTCACAATAATCATAGCCATTGGGACATGGAATTTGTGCTTGCTAGCAAATCCTTCATTGAATCCATGTCCTTCAACTACTTCTTGAGTCCCTCAGTACAAACCTCCAAATCTTTGTTTGCTGTTGAAGCCCCCATTGGTTGGTTTGACTGCCCTGCACATGGACAAGAATTAGGACGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTTAATGATAAAATTCCACATGAAAAATATACTCCCAAACAAGCGATTCATCAACAGAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACAAAAGAAGGAATTGCTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGACCAATCTGTACAAAAATTCTGTGATGAGGTTCAAGATTTTTGCTCCCAAAGAACAAATGAAAAGAAATATATACTTGTACATTGTACCCATGGGCATAATCGCACAGGTTATATGATTGTTCACTTTCTTGTGCGTACGAAATCTATATCTGTTACCGAGGCGATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTACATGTTTTATCGTGAAAAGAAACCTGAAGATCTTGTTTGTCCTCAAACTCCTGAGTGGAAGAGAACTTCGGATCCTGATTATCGTGGCCCAACTGTTCCGGCTGTGGACAATTATGGGCACATTCCAGAACAGGAGAATATAGTCAGAAATGAAGTAATGACAACTGACGATGTTTTGGGAGATCCAATTCCTTCAAATCAGCTGCGAGCGATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGAACACCGGGGGGAGAGGACGATTGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGAAAACCTGCAACTCTTGAGACAACGATATTATTATGCCACATGGAAAGCTGATGGGACACGCTATATGATGCTGATTACTTGTGATGAATGTTATTTGATTGACAGAAAATTTCTTTTCCACAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACAGGGATCCACACACACATAAGCAAGAGAGAAGATACCTCATCTATGATTTGATGGCAATCAATCAGGTCTCTTTGATAGAGCTGCCGTTTTATGAAAGGTGGAGATTGCTGGAGAAAGAAGTGATCGAACCTCGTAACATGGAGCGTGAGAGCCTTTCAAAAAATACGGATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGAAGGAAGGGATTCTGGTTACTATCCACTGTATCCAAGCTCCTACATAAGTTCATTCCACAACTATCGCATTCATCAGACGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTGGGAGCTGGTGATCGTCCCATGCTTTTTCTGTTTGAACGTGGACGGAAGAAGTTCATGGAAGAGAATGTTATCTTTAAAGATGCATCAGACATTTCTTCCTATTCCGGAAAGATCATTGAATGCTACTGGGATTCCGGGGAGCATCATTGGGTCTGTATGCGGATAAGAATAGACAAAGCAACTCCGAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACTGAAGAAGTCTTATTGAATGAGATCAATGAGACAATTTGCCTACCCTTGTATGCAGACAGAATACAAAAGGATATCAAGGCTCATCAGCATATGGTCTCCTCAAGGCGCAACATATCACAAGATCATATTGGAAAAAGCTCAACAGAAACAGCTTTAACAGGATACAATAACTCAAGATTTCACTAG 2073 0.4115 MPYPPSTKAKVCLADPPESPQYQRIAQFSQAIHNNHSHWDMEFVLASKSFIESMSFNYFLSPSVQTSKSLFAVEAPIGWFDCPAHGQELGRIIPSKVPLGESFNDKIPHEKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIAHVKIRCKGRDAVPDDQSVQKFCDEVQDFCSQRTNEKKYILVHCTHGHNRTGYMIVHFLVRTKSISVTEAINKFALARHPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRTSDPDYRGPTVPAVDNYGHIPEQENIVRNEVMTTDDVLGDPIPSNQLRAMQEVCYQLLKLNTGGRGRLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITCDECYLIDRKFLFHRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDRDPHTHKQERRYLIYDLMAINQVSLIELPFYERWRLLEKEVIEPRNMERESLSKNTDPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPMLFLFERGRKKFMEENVIFKDASDISSYSGKIIECYWDSGEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEEVLLNEINETICLPLYADRIQKDIKAHQHMVSSRRNISQDHIGKSSTETALTGYNNSRFH 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02846 690 FunFam mRNA-capping enzyme isoform A 571 643 - -
Vimu6g02846 690 CDD Adenylation_mRNA_capping 309 537 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vimu6g02846 690 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 306 537 - -
Vimu6g02846 690 Gene3D Protein tyrosine phosphatase superfamily 63 269 IPR029021 -
Vimu6g02846 690 Gene3D - 535 641 IPR012340 -
Vimu6g02846 690 PIRSF mRNA_capping_HCE 63 669 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vimu6g02846 690 Pfam mRNA capping enzyme, C-terminal domain 558 634 IPR013846 -
Vimu6g02846 690 Gene3D DNA ligase/mRNA capping enzyme 288 534 - -
Vimu6g02846 690 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 171 240 IPR000387 GO:0016311|GO:0016791
Vimu6g02846 690 PANTHER MRNA-CAPPING ENZYME 75 647 - -
Vimu6g02846 690 FunFam mRNA capping enzyme, putative 297 534 - -
Vimu6g02846 690 CDD RNA_5'-triphosphatase 78 244 - -
Vimu6g02846 690 ProSitePatterns Tyrosine specific protein phosphatases active site. 193 203 IPR016130 GO:0016311|GO:0016791
Vimu6g02846 690 Pfam mRNA capping enzyme, catalytic domain 338 536 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vimu6g02846 690 Pfam Dual specificity phosphatase, catalytic domain 127 247 IPR000340 GO:0008138|GO:0016311
Vimu6g02846 690 SUPERFAMILY Nucleic acid-binding proteins 539 648 IPR012340 -
Vimu6g02846 690 SMART dsp_5 103 248 IPR020422 GO:0006470|GO:0008138
Vimu6g02846 690 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 76 264 IPR029021 -
Vimu6g02846 690 FunFam mRNA capping enzyme family protein 72 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02846 Vimu-Chr6 25160773 25168459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02846 65 656 Protein tyrosine phosphatase (PTP) family AT3G09100 62.230 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02846 - K13917 vra:106758011 1269.6