Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02838 ATGGCTGCACCGCCAAATAACAGGCTTCAAACCATGTTAAGGACCGCAGTGCAATCAGTTCAATGGACTTACAGCCTCTTCTGGCAACTTTGTCCCCAACAAGGGATTTTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACTAGGAAGACGGTTCAAGCAATGGAAGTCAGCACTGAGGAAGCTTCTCTGCAAAGAAGCGATCAACTTCGAGAGTTATATGAATCTTTGTCTGCTGGAGAAGCGAACTCGCAAACACGAAGACCATGTGCTGCTTTGTCTCCTGAAGATCTAACGGAATCAGAATGGTTCTATCTGTTGTGTGTCTCTTTCTCCTTTCATCCTGGTGTCGGGTAA 363 0.4628 MAAPPNNRLQTMLRTAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSDQLRELYESLSAGEANSQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02838 120 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 119 IPR025610 -
Vimu6g02838 120 PANTHER TRANSCRIPTION FACTOR TT8 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02838 Vimu-Chr6 25084571 25085053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02838 1 120 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 67.500 4.28e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02838 - - pvu:PHAVU_001G1503001 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02838 6 25084571 25085053 Vimu6g02838 6 25084571 25085053 ECH
Vimu6g02838 6 25084571 25085053 Vimu3g01644 3 30519681 30530281 PCT