Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02837 ATGATTGATGATGATGTAAAATATAAATTAAGGTTGCCGGGAACAGCATATGCCAGGAGGCAGCATATATGGCTAACTGGTGCAAACGAAGTAGAGAGCAAAGCATTTTCCAGAGCTATTCTTGCCAAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGCTGGGCACAACCGACAAGATGGAAGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGATCAGCACCCTCCGACGGCAAAGCCTGCACTGTCAGAGCACTCCACCTCCAATCCCACATCTTCTTCATACCCAGTTGTCGTCACTGCCACTACTGCACCACCCAACCAAAACGACATGAACGTTGTCGTTGACAAAGGAAAAGAAGTTAAGTTGAATTCTGAAGCAGGATTAGCAGTTCGTAACAACAGTTTCATACCGACCGAACTAATGGAGCTGGACACGTTGGAGGGGTTTCGGGTCGGGTCACCCGGAGATGGATCCAACCACTTGGATTCGTTCCCCACAGAGGCGTCCATGGCACTGTGTTCTGCAGGGTTGGAACTTCTTCAACTTCAACTACCACCACAACCTCCAGAACACCCTCCCTCAGAAAACAAAGCACAAGGCGACACAGACACTCACTACTCTCAGACAGTGTCCAGCATCCTCCAGAAGAACTCCGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACCGATTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCAGCGACGAGTACCGCGGGCACCTCCAGATGACGGTGGCAGACGTAACATCGCAGTGGCTCCTCAAGTACATTCTCTTCAGTGTTCCTTACCTGCACGCCAACCGGGTAAAGGGGAAGGGCGCCCCGTCATACGAGACAAGCCATGTGATGGCGGAGCGGCGTCGGAGAGAGAAGCTGAATGAGAGGTTTCTGATATTGCGTTCAATGGTACCTTTTGTAACGAGAATGGACAAGGCATCGATTCTGGGAGACACCATCGAATACATAAAACAGCTGAGGGAGAAGATTGAGAGTTTGGAGGCACGTGAGCGGCACGCGGGGAAGAGGAGGATGAGGGAGGTGGAGGTTTCGATCATAGAGAGCGATGCACTGTTGGAGTTGGAGTGTGTACATAGGGAAGGGTTGTTGCTGGATGTGATGACATTGTTGAGGGAGTTAGGGGTTGAAGTGATGATGGTGCAATCCTGGGTTAGGGATGATGGAATCTTTGTCGCAGAGATGAGGGCCAAAGTCAAGGAAAATGGGAACGGGGAAATGGCTAGTATTCTGGAAGTGAAGAATGCCCTAAACCAGATTATACCCCACCATGACCCATACACACTGCCTTCCAATGATCATTTTTAA 1380 0.5007 MIDDDVKYKLRLPGTAYARRQHIWLTGANEVESKAFSRAILAKTVVCIPVLEGVVELGTTDKMEEDLNFIQHIKSFFIDQHPPTAKPALSEHSTSNPTSSSYPVVVTATTAPPNQNDMNVVVDKGKEVKLNSEAGLAVRNNSFIPTELMELDTLEGFRVGSPGDGSNHLDSFPTEASMALCSAGLELLQLQLPPQPPEHPPSENKAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGSDEYRGHLQMTVADVTSQWLLKYILFSVPYLHANRVKGKGAPSYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEARERHAGKRRMREVEVSIIESDALLELECVHREGLLLDVMTLLRELGVEVMMVQSWVRDDGIFVAEMRAKVKENGNGEMASILEVKNALNQIIPHHDPYTLPSNDHF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02837 459 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 77 IPR025610 -
Vimu6g02837 459 Pfam Helix-loop-helix DNA-binding domain 298 345 IPR011598 GO:0046983
Vimu6g02837 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 357 IPR036638 GO:0046983
Vimu6g02837 459 PANTHER TRANSCRIPTION FACTOR TT8 12 447 - -
Vimu6g02837 459 MobiDBLite consensus disorder prediction 191 211 - -
Vimu6g02837 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Vimu6g02837 459 Gene3D - 290 360 IPR036638 GO:0046983
Vimu6g02837 459 SMART finulus 301 350 IPR011598 GO:0046983
Vimu6g02837 459 Coils Coil 334 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02837 Vimu-Chr6 25078231 25083088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02837 12 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 65.909 1.50e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g02837 bHLH-MYC_N 2.6e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02837 - - gmx:100802733 648.662