Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02802 ATGAGAGAGGGACAAAGCTTGAATTTAATCAATGAGAGGAAGAGAGGGAGAAGAGATGAAGCAGTGGAATGGAACCCAGAATGCTCAATGAGGCTTGAGCTTGAGGTGCGTCTCAGGATGGGACAAATTACCGGAAGCCGCAACGAAAACGTGCAAACGCAATTGGGTAGCGGTGGATTTCGATTTTCTGGAAATTTAAAGCGTTCAAATGATAATAAGCTTTTGGGGCTGGAACTCATTTCCAGATTTCACCGCCGCACCAGAGGTTTAAGACGCTTAAGGAAGATACATGGTGTGGATTTGGCGAATCGAACTCTGGATATATGCCCCAGAAGAATTATCAAAACTGAAATAATAGAAGGGAGTGAGCGAATACCTGAGGGCGAGATGAATCAAGCTGAGAAGGTTGCGAGAAATGAGAACAAAGTGGTGATTGAGGAGGGAAAGGGTGTAAACAGCCTTGAAAGAGTGAAGAGGATGAATTTGTCAAAAGAAAAACCGTTTTGTCCAAGAAATAATAAGAGGACACGTAGAAAGCTGAACACAGGAAAACGAACTGTGTTTTCGTGGATGATTGCTGTGAAAACGATGAAATCACGAGAGAGGGTTTATTACATGGATCACAAGAGTAAAGCTGTGTCACTGGGTGGAGATGCCGTTGGAGATGGCATTCTGTGTGACTGTTGTTCTCAAGTTGTGTCCATTTCTGAGTTTGAATTTCACTCATGGAAGCAAGAACACTTGAATTCAGTGGGAAAAAGATCAGATCCACTACGAAACATATGTTTGGGGAGAGGAAGAGGACTTTGTCTCTTGCAATGCATGGCAGAAGCCTGGAGTAAGCAAACTGATTTTTCTTCTAAGTTTTATAACTTGGTCGTCCGTGAGGACAACGAAAAAAGCGACGACATTTGTAGAGTTTGTGGGGAAAGGGGAAATCTTCTTTGTTGCGATGGTTGCCCATCAACTTTTCATCAGACCTGCCTGGGTATACAAACAATTCCAGAAGGTGAGTGGCGCTGTATGAGTTGCTGCTGCAAATTTTGTGGTTTGCAGTGTGAAAAGACTGAGATCAGCTTTGAAGGCCTTGCACCGTCTGAGATGTCGACCGAATGCCTTGTATGCGAGAGAAGATTTCACCAATCCTGTGCCAATGGAGGCAATTCTTCTCGTAACAAAAGCCTACCCTTATGTGGAAACGGATGTGGGGAGGTATCATCTATTTCTTTCATCTTCTTCAATCTTACGCCTACTTCTAAATTTATGATGGCGATGTTATGTTATTCAACTGCAGAATCTGATAGGGAAGAAAATAATGCTGTAAATATACAAATAGAGGGGCAAAATATGGAAAATGATGGGGTAGTTACTAACAACCCGGAAAGTCAGGGAGTGAGACGTGGAGCTAGGCCACGTACTCGAAATAGAATGCTGAGGGATTTTGTGTAG 1449 0.4306 MREGQSLNLINERKRGRRDEAVEWNPECSMRLELEVRLRMGQITGSRNENVQTQLGSGGFRFSGNLKRSNDNKLLGLELISRFHRRTRGLRRLRKIHGVDLANRTLDICPRRIIKTEIIEGSERIPEGEMNQAEKVARNENKVVIEEGKGVNSLERVKRMNLSKEKPFCPRNNKRTRRKLNTGKRTVFSWMIAVKTMKSRERVYYMDHKSKAVSLGGDAVGDGILCDCCSQVVSISEFEFHSWKQEHLNSVGKRSDPLRNICLGRGRGLCLLQCMAEAWSKQTDFSSKFYNLVVREDNEKSDDICRVCGERGNLLCCDGCPSTFHQTCLGIQTIPEGEWRCMSCCCKFCGLQCEKTEISFEGLAPSEMSTECLVCERRFHQSCANGGNSSRNKSLPLCGNGCGEVSSISFIFFNLTPTSKFMMAMLCYSTAESDREENNAVNIQIEGQNMENDGVVTNNPESQGVRRGARPRTRNRMLRDFV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02802 482 ProSitePatterns Zinc finger PHD-type signature. 305 344 IPR019786 -
Vimu6g02802 482 ProSiteProfiles Zinc finger PHD-type profile. 302 347 IPR019787 -
Vimu6g02802 482 Pfam Tify domain binding domain 218 278 IPR032308 -
Vimu6g02802 482 SUPERFAMILY FYVE/PHD zinc finger 294 350 IPR011011 -
Vimu6g02802 482 MobiDBLite consensus disorder prediction 452 474 - -
Vimu6g02802 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 373 IPR013083 -
Vimu6g02802 482 Pfam PHD-finger 304 346 IPR019787 -
Vimu6g02802 482 PANTHER PHD FINGER PROTEIN 12 141 405 IPR042163 GO:0003714|GO:0045892
Vimu6g02802 482 SMART PHD_3 304 345 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02802 Vimu-Chr6 24632168 24635420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02802 180 405 PHD Transcription Factor Family AT5G36670 36.842 1.20e-41 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu6g02802 TDBD 8.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02802 - - pvu:PHAVU_001G152900g 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02802 6 24632168 24635420 Vimu6g02802 6 24632168 24635420 ECH
Vimu6g02802 6 24632168 24635420 Vimu3g01619 3 30150553 30158079 PCT