Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02801 ATGCTCCAGCACCTCGACCAACATGCCACCACCTTCGAGATGCTGACATCCTATATATATGAGAGACTTCAAAGGCTTCTTCGTGTTAAACATGATATAGAGGATGGATTTTCTTGGTCTTTTATTTACCGGGCAGATACTGATCCTGATAGAACAATTTTAGATACCGAAAAGGTAGAATGCAATGCTAAACTGGGTGTTGCATTATCGGTATTAAGTGAGAGCTTCATGCCATACATTGAAGAAGGAAGCGGGACAAATATAATACAAAGTATTGTATATAGTTGTGGATCAAACATCCCTCGCCTGGACTGTAAAGGGTTTATTACTGTGATTCTAGAGAAGGATTACGAGATTATCAGCGTTGCATCAATCAGGATTCATGGGAACCTACTAGCAGAGATGCCATTTGTTGCAACTGTTTTTGCTTATAGGAAGAAAGGAATGTTCGCTCGGCTTCTAAAAATAATTGAATCTACACTCAGGCACCTCAACGTTGAGTTATTGGTGGTACCGACCGTGAAACAAACAAAGGAAACTTGGGTTCGTTCTTTTGGGTTTGAGCCACTCGATAAAAGAACAGAGAACATAATAAAGGGCGTGAATCTGATGGTATGCCGTGGCACAGAAAAGTTGCAGAAGAAGATACCAAAACTTACATAA 663 0.4027 MLQHLDQHATTFEMLTSYIYERLQRLLRVKHDIEDGFSWSFIYRADTDPDRTILDTEKVECNAKLGVALSVLSESFMPYIEEGSGTNIIQSIVYSCGSNIPRLDCKGFITVILEKDYEIISVASIRIHGNLLAEMPFVATVFAYRKKGMFARLLKIIESTLRHLNVELLVVPTVKQTKETWVRSFGFEPLDKRTENIIKGVNLMVCRGTEKLQKKIPKLT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02801 220 PANTHER PHD FINGER PROTEIN 12 19 217 IPR042163 GO:0003714|GO:0045892
Vimu6g02801 220 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 109 203 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02801 Vimu-Chr6 24623421 24627007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02801 19 216 PHD Transcription Factor Family AT1G05380 43.719 1.78e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02801 - - vun:114187404 362.844