Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02800 ATGATGCCAAACATGCCGCGAACTGGAGAAAGAAGAAGAAAAAGATACAACCTTAGCCGCTTGAACTTGAACCTATGTTTCTCAATTCCCATGCAATCGTTCACACCACAATCTTCCCCTACCGCCACCTCTTCAACCCTTCTTCACAATCAAAACAATAAACCTCTATCACAGCCCGCCACGTCACCGTCCTCGATCAACAACTTCAATTACGACCCTTCTAACCCATTCCCGAACCTCGGACCCGAACCCGAACCTTCTGACCTGGCCTCCGCTTTCGTCTCCCACCGCTTTTTCTTCACCTACCCCGGCCGCTCCAACTCCATCGTCGAATCCACCATCACCGACACCGATTGCGCCACCTCCTCGTCCTCGCTGGGAAACCCAGTCGCCACCGTTGACGAAAAGGCGAAAACGGCGCTCGAAGGCAGCGTTGCGGTGGAGATGTACTCGCTGGACCCCTACGCGGATTTCCGGCGCTCCATGGAGGAGATGGTGGCGGCGAGTCCCGAGTTGATCGACGTGGCGGCTAATTGGAAAGAGCTTCTTTTCTGCTACCTCGCGCTCAACCCGAAGAGCACGCACAAGTTCATCCTCTGCGCTTTTTCTGATCTTCTTCTAAGCCTCATCTCGCACTCTTCTCCTCCGCCGCAGGATGAAGCTGCCGGCGATGGATGTTCGAATTCGATACAGTAA 696 0.5417 MMPNMPRTGERRRKRYNLSRLNLNLCFSIPMQSFTPQSSPTATSSTLLHNQNNKPLSQPATSPSSINNFNYDPSNPFPNLGPEPEPSDLASAFVSHRFFFTYPGRSNSIVESTITDTDCATSSSSLGNPVATVDEKAKTALEGSVAVEMYSLDPYADFRRSMEEMVAASPELIDVAANWKELLFCYLALNPKSTHKFILCAFSDLLLSLISHSSPPPQDEAAGDGCSNSIQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02800 231 ProSiteProfiles OVATE domain profile. 147 208 IPR006458 -
Vimu6g02800 231 MobiDBLite consensus disorder prediction 37 84 - -
Vimu6g02800 231 Pfam Transcriptional repressor, ovate 151 209 IPR006458 -
Vimu6g02800 231 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 54 209 IPR038933 GO:0045892
Vimu6g02800 231 MobiDBLite consensus disorder prediction 37 75 - -
Vimu6g02800 231 NCBIfam uncharacterized plant-specific domain TIGR01568 145 210 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02800 Vimu-Chr6 24619076 24620122 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu6g02800 Ovate 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02800 - - pvu:PHAVU_001G153000g 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02800 6 24619076 24620122 Vimu6g02800 6 24619076 24620122 ECH
Vimu6g02800 6 24619076 24620122 Vimu3g01616 3 30134316 30136771 PCT