Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02787 TACCATCACATACATATTTGGTTGGTTTTAGAGATGGGTAACGCAGACTATGAAAACCCAGTGGCTATTCCACCCCCTCAACCATTCTTCAACTCTCTCAAGTACTCCTTGAAAGAGACCTTTTTCCCAGATGACCCCTTTAGGAAGTTCAAGAACCAAACACCCTCTGTCAAGTTCGTCCTTGGACTTCAGTACTTCTTCCCCATCTTTGAATGGGCACCCAAATACACCCTCCAGTTCTTGAAATCAGACCTCATATCTGGCATCACCATTGCCAGTTTGGCCATTCCTCAAGGCATCAGCTACGCCAAGCTCGCCAACCTCCCTCCAATTCTTGGACTTTATTCGAGCTTCATACCCCCACTGATTTATGCTATGATGGGAAGCTCAAGGGATTTGGCAGTGGGAACTGTGGCGGTTGGATCACTTCTGATGGCTTCTATGTTGGGTCGAGTGGTGAACTACATCGATAATCCAAACCTTTATCTCCATCTAGCTTTCACTGCTACATTCTTTGCTGGAGTTTTGCAGGCATCACTGGGCTTATTCAGGTTAGGGTTTATCGTGGATTTTCTGTCACATGCAACCATAGTAGGGTTTATGGGGGGAGCAGCCACAGTGGTTTGTCTGCAACAGCTAAAATCTATTCTTGGCCTTGAACATTTTACTCACGAGGCTGATATAGTGTCAGTGATGCGCTCTGTTTTCAGCCAAACTCACCAGAGCAAACGACAACCAAAGTTCTTCTGGGTGTCAGCAATGGCACCATTGGCGTCGGTCATACTCGGAAGTCTGCTGGTTTATCTCACACACGCTGAGAAACATGGAGTTCAAGTGATAGGAAAATTGAAGAAGGGGCTGAATCCACCTTCCGTGACGAATTTGGTATTGGTGTCACCTTACATGGGAACTGCCATAAAAACTGGACTTGTCACTGGCATTATAGCACTTGCGGAAGGAATAGCAGTGGGTAGAAGCTTTGCAATGTTTAAAAATTATCATATTGATGGGAACAAAGAGATGATAGCTATTGGAACCATGAATATTTTTGGTTCGTTCACCTCTTGCTATCTCACCACAGGACCTTTTTCACGTTCGGCTGTGAACTATAATGCGGGGTGCAAGACTGCCGCATCAAACATTGTGATGGCTATAGCAGTGATGTTAACATTGTTATTCTTGACACCCTTGTTCCATTTCACTCCCCTTGTGGTGTTATCAGCCATAATTGTGTCAGCAATGCTCGGGCTCATTGATTATGAAGCAGCCATTCATTTGTGGAAAATCGACAAATTTGATTTCTTTGTGTGCTTCAGTGCTTATGTTGGTGTAGTCTTTGGCAGTGTTGAAATTGGCCTAGTCATAGCAGTATATCTTAATCATTATTCTGTTATGAGAAATTTCAGGTTGCTGTATCTCTACTTCGAGATCACAAGGTGGATAGATGAAGAGGAAGATAGGATAAAAGCTTCAGACCAAACCACTTTACAGTATGTTATAATTGATATGACTGCTGTTGGAAACATAGATACTAGCGGAATAAGCATGCTTGAAGAGTGCAAGAAAACTGCTGACAGAAGAGGGTTACAACTTGTTTTGGTAAATCCTGGAAGCGAGGTGATGAAGAAGCTGAACAAATCAAAGTTCCTTGATGAACTAGGGCATAAATGGGTGTATCTGACAGTTGAAGAGGCTGTTGGTGCATGCAATTTCATGCTCAACTCATACAAACCGAACCCCATGAAGGATGATTCAGAAGGTTGGAACAATGCCTGA 1776 0.4341 YHHIHIWLVLEMGNADYENPVAIPPPQPFFNSLKYSLKETFFPDDPFRKFKNQTPSVKFVLGLQYFFPIFEWAPKYTLQFLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMASMLGRVVNYIDNPNLYLHLAFTATFFAGVLQASLGLFRLGFIVDFLSHATIVGFMGGAATVVCLQQLKSILGLEHFTHEADIVSVMRSVFSQTHQSKRQPKFFWVSAMAPLASVILGSLLVYLTHAEKHGVQVIGKLKKGLNPPSVTNLVLVSPYMGTAIKTGLVTGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAIGTMNIFGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMAIAVMLTLLFLTPLFHFTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFFVCFSAYVGVVFGSVEIGLVIAVYLNHYSVMRNFRLLYLYFEITRWIDEEEDRIKASDQTTLQYVIIDMTAVGNIDTSGISMLEECKKTADRRGLQLVLVNPGSEVMKKLNKSKFLDELGHKWVYLTVEEAVGACNFMLNSYKPNPMKDDSEGWNNA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02787 591 Pfam Sulfate permease family 243 439 IPR011547 GO:0016020
Vimu6g02787 591 Pfam Sulfate permease family 81 241 IPR011547 GO:0016020
Vimu6g02787 591 CDD STAS_SulP_like_sulfate_transporter 485 562 - -
Vimu6g02787 591 ProSitePatterns SLC26A transporters signature. 110 131 IPR018045 GO:0008271|GO:0008272
Vimu6g02787 591 ProSiteProfiles STAS domain profile. 477 569 IPR002645 -
Vimu6g02787 591 Pfam STAS domain 476 565 IPR002645 -
Vimu6g02787 591 SUPERFAMILY SpoIIaa-like 486 569 IPR036513 -
Vimu6g02787 591 Gene3D STAS domain 468 572 IPR036513 -
Vimu6g02787 591 PANTHER SULFATE TRANSPORTER 476 572 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02787 Vimu-Chr6 24486809 24493579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02787 14 579 Inorganic Solute Cotransporters AT4G02700 61.611 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02787 K17471 - gmx:100791091 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02787 6 24486809 24493579 Vimu6g02787 6 24486809 24493579 ECH
Vimu6g02787 6 24486809 24493579 Vimu3g01599 3 29888138 29893429 PCT