Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02786 ATGATTAGTCCCTTGACGAGAAAGGCTCTTGTCTGCAGAAAGTGGAATTTCACTCTATCACTGATAGTGGGTGGTAAAGTGATTTCAATTCAAATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAATGTATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCGTGGGTCGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAAGGGTGTCAACTTTTCTGAAGAGAAACTTTGCAAGTGGCTTGTTCAATTGCTGATGGCTCTTGATTACTTGCATGGAAATCATATCCTTCATCGTGACGTGAAGTGTTCAAATATATTCTTGACAAAAGATCGAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACACCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCACTTTCGAGGGCTCGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTCTTGTTTGTTGCTCTCCATTTGTCTTATGGAAAATGCAACCTCGTTTGTTTTCCATATTGCAAAGTCACGCATACGAGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTATATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGCCGGAGCCAAATTATGTAAGGAGAACTCGGTTCGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGCATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAACTATCTGTAGGCTGTGTAGGTAATAAATACAATCCTGATACGAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGCCTCTGGCACTGCGAAAAGGCAAACAATTGCACCATCAAAGACAACCTATACTGGTCCAGACCGAGATTCACTTCCAGCATCTAAGGGACCATCTGGAAGGTTTTCCTCACCAACAAGAGCCAGGGCGACGACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATACCCAATGGCTTACAGTGAGGATCCTTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTGCTCTTCAAGCTCAACACGGAGTACTGCTGATTGCTCCATCACAATGGTCAAGTGTACAATTCAGGAGGACAAAGTTACTGTCCCCAACATTATCAGTGATGCTTGCCCTGGTCCAAAGGCAACTCAATGCCCTTCTGAGCATGTAAAAGCTTGTGTTTCTATTCGCTCCTCTGCTGAGGTGGATCAGCGCCGGTTTGACACGTCATCATACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTTGATGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCTAGAGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1896 0.4335 MISPLTRKALVCRKWNFTLSLIVGGKVISIQMEQYEILEQIGKGAFGSALLVRHRHEKKMYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKAKGVNFSEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALSRARQKYAAEKSRAEANSCLLLSICLMENATSFVFHIAKSRIRASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPNYVRRTRFVEPESVSTLSDQDKCLSFSKDRALNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVGNKYNPDTKFSTVERTPRLRAVTASGTAKRQTIAPSKTTYTGPDRDSLPASKGPSGRFSSPTRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEYPMAYSEDPFFPVRGPSSTSARCSSSSTRSTADCSITMVKCTIQEDKVTVPNIISDACPGPKATQCPSEHVKACVSIRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02786 631 FunFam Serine/threonine-protein kinase Nek2 32 114 - -
Vimu6g02786 631 Coils Coil 234 254 - -
Vimu6g02786 631 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Vimu6g02786 631 Gene3D Transferase(Phosphotransferase) domain 1 117 338 - -
Vimu6g02786 631 MobiDBLite consensus disorder prediction 410 430 - -
Vimu6g02786 631 Gene3D Phosphorylase Kinase; domain 1 22 114 - -
Vimu6g02786 631 MobiDBLite consensus disorder prediction 409 448 - -
Vimu6g02786 631 CDD STKc_Nek 34 236 - -
Vimu6g02786 631 Pfam Protein kinase domain 35 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02786 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Vimu6g02786 631 ProSiteProfiles Protein kinase domain profile. 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02786 631 SUPERFAMILY Protein kinase-like (PK-like) 23 330 IPR011009 -
Vimu6g02786 631 SMART serkin_6 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02786 631 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 32 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02786 Vimu-Chr6 24460435 24469945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02786 30 231 MAP Kinase Kinase Gene Family AT4G29810 32.843 2.05e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu6g02786 Pkinase 5.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02786 K08857 - gmx:100805201 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02786 6 24460435 24469945 Vimu6g02786 6 24460435 24469945 ECH
Vimu6g02786 6 24460435 24469945 Vimu3g01597 3 29824409 29829958 PCT