Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02780 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTTTGAATCGCCACCACCATCCTCCTCATCGTCGCCAACGTCTCAAACGGGAGGGGATGAGTCAGCAATGGTTTTTCTTCCGAGGCCAATGGAGAGGCTTCACGAAGTAGGGCCACCTCCATTTCTGACCAAGACTTACGATGCCGTGGAGGACCCTACCACTAGCCACATAGTTTCATGGAGCAGAGGTGGTGCCAGCTTTGTGGTTTGGGATCCTCACGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCACAACAATTTCTCCAGCTTTGTAAGGCAACTAAACACTTACATTTCTAGATCTCTCTATTCTCCAGTCTCTCTCTCATTCATTCTGCTGTGGCCTGCCGTAGTGGGTTTTAGAAAGATTGATCCCGATAGGTGGGAGTTTGCAAACGAAGGATTCCTGAGAGGACACAGGCACCTTTTGGCAAACATAAGGAGAAGAAAGCAACCTTCTCAGCCTTCCAGTTCTCAACAAGGACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTTGATGAAGAGGTTGATCGTTTAAAGCGTGACAAGCACGTGCTGATGATGGAGCTTGTGAAGCTGAGACAGCAGCAGCAGAATACGAGGTCGTACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAGCAGATGATGTCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCAATGTCGAAGAAGAGGAGAAGACCAATCGAGCAAGGAGGAAGTGGGGTTGGAGAATCAAGCATTGGAAGGGAAGGAAGAAACAGCGTTAAAGTGGAGTGCCAAGTGTTTGGGGAATATGGATTTGGAGTCTCAGAGTTGGAAGTGTTGGCTTTGGAGATGCAAGGTTATGGTAGGGGAAAGAGGGAACAAGAGGAAGAGCCTGAGGCACTAGAATCACAGGAGAGGTTGGAGAAAGAACTTGATGAAGGTTTCTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCACAAGACCCAGATGAAGAAGAAGATGTCAATGTGTTAGCCAATCGCTTTGGTTACTTAGGGTCAAGTCCTAAATGA 1176 0.4736 MNYLYPVKEEYFESPPPSSSSSPTSQTGGDESAMVFLPRPMERLHEVGPPPFLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYISRSLYSPVSLSFILLWPAVVGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKQPSQPSSSQQGQGHCVEVGRFGLDEEVDRLKRDKHVLMMELVKLRQQQQNTRSYLEEMEERLRGTEIKQQQMMSFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGGSGVGESSIGREGRNSVKVECQVFGEYGFGVSELEVLALEMQGYGRGKREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQDPDEEEDVNVLANRFGYLGSSPK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02780 391 SUPERFAMILY "Winged helix" DNA-binding domain 48 162 IPR036390 -
Vimu6g02780 391 MobiDBLite consensus disorder prediction 14 31 - -
Vimu6g02780 391 MobiDBLite consensus disorder prediction 10 32 - -
Vimu6g02780 391 Gene3D - 45 163 IPR036388 -
Vimu6g02780 391 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02780 391 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02780 391 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02780 391 MobiDBLite consensus disorder prediction 260 288 - -
Vimu6g02780 391 FunFam Heat shock transcription factor 1 45 163 - -
Vimu6g02780 391 Coils Coil 190 224 - -
Vimu6g02780 391 Coils Coil 252 272 - -
Vimu6g02780 391 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 38 282 IPR027725 -
Vimu6g02780 391 MobiDBLite consensus disorder prediction 260 276 - -
Vimu6g02780 391 Pfam HSF-type DNA-binding 52 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g02780 391 SMART hsfneu3 48 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02780 Vimu-Chr6 24408956 24410717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02780 38 389 HSF AT3G22830 51.680 1.03e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu6g02780 HSF_DNA-bind 3.5e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02780 K09419 - gmx:100794264 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02780 6 24408956 24410717 Vimu3g01584 3 29687956 29689374 PCT