Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02779 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCTGAGGATGCCAGTGTTTCTTCTGGTACAAAACTTCAGGACCTTGGAGGACTCACTCACGCCCTTTCTAACATTTCTCCTCAACAACAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCTACTAATAGATTTGTTTGCGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCACAGGAGAGGCCATAACCTCCCCTGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCTTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCCAGGGCCCTTGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGTAGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACCCATCAACAGAACTTCCAAAACCACCATATGACCAGCTTCAACCAATGGGACTCGTCTCAAGAAAACCCTAACCCTAGCAACATTGCCACTTCCCTCCAAATCAAGCCAGAATCTCAAACTTTCCACAACCCCACTCTCTCTTCACTTCTCCAACACCAAGAGCAGCCACATCCCAACAAGGGCATGATAGCCTCACCCTTCGGGAACCTCCACGTGCCCTCACAAGCCTCCAGCGCTACCAAGTCAGCATACATGTCAGCCACTGCGTTGCTTCAAAAGGCTGCATCCGTTGGAGCCGCTGCCATGACGGGCCCAGGCCCTGCTGCTGTTGGGCCTCAGACCGCAATGGGTCACGTGACTCAGCTCGGAACAGCGAGCCAACTCGACCCTCTGGTGGTGCCGGATAGCTACATGAGAGGATTCCCCGGTCGTAGCCTCAAGAATGACCGTCTCACTAGGGACTTCCTCGGACTCACGGCAGAAGTTAACGGCGGAGTTGACGGCGCGGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGACGTTCGCAGGGGGTGTAGAGTACCACCAACCGCTCCGTCAGCATCACCACCACGCGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1374 0.5066 MFPTAISNSTSLSEDASVSSGTKLQDLGGLTHALSNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAATTTTNPFQSLFLFQTHQQNFQNHHMTSFNQWDSSQENPNPSNIATSLQIKPESQTFHNPTLSSLLQHQEQPHPNKGMIASPFGNLHVPSQASSATKSAYMSATALLQKAASVGAAAMTGPGPAAVGPQTAMGHVTQLGTASQLDPLVVPDSYMRGFPGRSLKNDRLTRDFLGLTAEVNGGVDGAAVDVSTNVKDMLTFAGGVEYHQPLRQHHHHALLKPQQGFGFLETTTAPETWGNC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02779 457 Gene3D Classic Zinc Finger 145 210 - -
Vimu6g02779 457 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vimu6g02779 457 Gene3D Classic Zinc Finger 55 124 - -
Vimu6g02779 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Vimu6g02779 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 408 IPR031140 -
Vimu6g02779 457 MobiDBLite consensus disorder prediction 1 59 - -
Vimu6g02779 457 MobiDBLite consensus disorder prediction 1 48 - -
Vimu6g02779 457 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Vimu6g02779 457 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Vimu6g02779 457 FunFam protein indeterminate-domain 12-like 55 123 - -
Vimu6g02779 457 SMART c2h2final6 76 98 IPR013087 -
Vimu6g02779 457 SMART c2h2final6 152 172 IPR013087 -
Vimu6g02779 457 SMART c2h2final6 117 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02779 Vimu-Chr6 24389082 24392349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02779 15 444 IDZ Gene Family AT4G02670 50.000 6.04e-132 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g02779 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02779 K25870 - gmx:100788975 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02779 6 24389082 24392349 Vimu3g02085 3 35724885 35728284 PCT