Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02773 ATGGTCAAGGACAAAAACTTGTCAGCCTTTACAGAGTTTGGAGGAGTTGAAGGTGTTGCAAACATTCTTGGAACCATTCCAGAAAAGGGAATCACTGGCAGCCATGATGATGTTGCCAAACGTATTCAAGTATTCGGTTCCAACACTTACCAGAGGCCACCGCCTAAGTTTTTCCTGAGCTTTGTAGTGGAAGCTTTCAATGACACTACTATTCTGATTCTTCTTGTTTGCGCCGGTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGTCCGGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTGTAGCAGTGTTTCTGGTGGTGGTTGTTACCGCACTCAGCAACATCAGACAAGAGAGACAGTTTGACAAATTGTCAAAGATAAGCAACGACATCAAAGTAGAAGTAGTGAGAAATGGAAGGCCACAGCAGATATCCATCTTTGATGTTGTAGTGGGAGATATTGCATCCCTTAAGATTGGTGATCAGATTCCAGCAGATGGATTAAGCCCCTTCTTGTTGTCTGGTGCAAAAGTGGTGGATGGATATGCTCAGATGCTAGTGACATCTGTGGGAACCAACACAGCATGGGGTGAAATGATGAGCTCGATATCGCGAGACACCAACGAAAGGACACCATTACAGGCTCGCCTTGACAAGTTAACCTCTTCTGTTGGAAGGGTAGGCCTCAGAGTCGCTTTTCTTGTTGTCAGAGTCTTGTTATTTCGTTATCTCACTGGAAACACACAAGATAATGAAGGGAATACAGAGTTCCAGGGGAGTAAAACTGGTATAAACGACATTTTCAATGCGGTTGTGAGGATTGTCGCTGCTGCAGTGACAATTGTGGTTGTTGTAATCCCAGTGGGTCTGCCGTTGGTCGTCACTCTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGACCATGCAATGGTGAGGAAACTTTCTGCTTGCGAAACCATGGGATCGGCTACAGTTATTTGCACGGATAAAACTGGTACCTTAACCTTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCTGCAAAATCTCGCGGAAAAGTTTTCCAATGCAATGGCCCCTAAAGTTCTTGAATTATTCCAACAAGGAGTTGGCCTCAACACTACTGGAAGTATCTATAAATCTTCATCAATATCTGAACCTGAAATTTCTGGCAGCCCAACAGAGAAAGCTATACTCTTGTGGGCCGTGTCAGATTTAGGCATGGACATGGATGAACTGAAGCGCACACACGAAGTTCTCCATGTTGAAACGTTTAACTCTGAAAAGAAACGAAGTGGCGTGGCAATAAGGAAGGAGAATAACAACACAGTTCACGTTCACTGGAAAGGTGCTGCAGAGATTATACTTGCAATGTGTTCAAATTATATTGACAATAACGGCATAGAGAAGTCCCTTGACGAAGAGCGGAGCAAACTTGAAAATATAATTGAAGGCATGGCTGCCAGCAGCCTTAGATGTATTGCTTTTGCTCACAAGCAGATTTCAGAAGATATTGATTATAATGATAAGGAGAAAGCACACCAAATCCTTGGAAAAGACGGCTTGACCTTGCTAGGTATTGTTGGCCTCAAGGATCCATGCCGACCCGACGTCAAGGAGGCTGTGGAAATGTGTAAACATGCAGGAGTTAGTGTGAAGATGATCACATGTGATAACATATTCACTGCAAAAGCAATAGCAACAGAATGCGGAATATTAGACTTTGATGGCGATGTGAGCGCGGGAGAAGTGGTGGAGGGTGTGGAATTCAGGAATTATTCTGAAGAAGAGAGAATGGAGAGAGTAGAGAAGATCCGCGTGATGGCAAGATCATCCCCTTTGGACAAACATTTGATGGTGCAGTGCTTGAAAAAGAAAGGTCATGTTGTTGCAGTCACAGGAGATGGCACAAATGACGCACCTGCTTTGAAAGAAGCTGACATTGGACTTTCTATGGGGATCCAAGGAACTGAAGTTGCCAAGGAGAATTCTGACATTGTCATCTTAGATGACAACTTCAGTTCTGTTGTGACTGTTTTAAGGTGGGGGCGATGTGTTTACAACAACATCCAAAAGTTCATACAGTTTCGACTAACCGTGAATGTCACAGCTTTGGTGATCAATTTTATTGCCGCCGTTACTTGGAGAGATGTTCCCCTGACAACAGGTCAACTTTTATGGGTAAATCTGATAATGGATACGCTAGGAGCACTGGCACTGGCAAGAGAAAGACCTACAAAGGAGTTAATGGAGAAAAAGGCAGTGGGTAGGACTGAGCCTCTTATTACTAATATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATTTCAGATTGTTGTCCTCCTGGTTTTACAATTCAACGGAGAGTCTATCTTCAATGTTAGAAAGGAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTATTCAACGAGTTCAACTCTAGAAGTATGGAGAAACTCAATGTATTCCGAGGGCTTCACAGAAACCATTTGTTTCTTGGAATTGTTGGGATTACAATTGTTGTTCAAGTTGTGATGGTGGAACTTTTAAGGAAGTTTGCTGATACAGAGAGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGCTGTGTCATGGCCAATTGCTTTGATTACAAAGCTCATACCAGTTTCAGATACACCCTTCAACCACGTTAAGTGTGTAAAATTATTGGTCTCCTAG 2733 0.4281 MVKDKNLSAFTEFGGVEGVANILGTIPEKGITGSHDDVAKRIQVFGSNTYQRPPPKFFLSFVVEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVTALSNIRQERQFDKLSKISNDIKVEVVRNGRPQQISIFDVVVGDIASLKIGDQIPADGLSPFLLSGAKVVDGYAQMLVTSVGTNTAWGEMMSSISRDTNERTPLQARLDKLTSSVGRVGLRVAFLVVRVLLFRYLTGNTQDNEGNTEFQGSKTGINDIFNAVVRIVAAAVTIVVVVIPVGLPLVVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLQNLAEKFSNAMAPKVLELFQQGVGLNTTGSIYKSSSISEPEISGSPTEKAILLWAVSDLGMDMDELKRTHEVLHVETFNSEKKRSGVAIRKENNNTVHVHWKGAAEIILAMCSNYIDNNGIEKSLDEERSKLENIIEGMAASSLRCIAFAHKQISEDIDYNDKEKAHQILGKDGLTLLGIVGLKDPCRPDVKEAVEMCKHAGVSVKMITCDNIFTAKAIATECGILDFDGDVSAGEVVEGVEFRNYSEEERMERVEKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKENSDIVILDDNFSSVVTVLRWGRCVYNNIQKFIQFRLTVNVTALVINFIAAVTWRDVPLTTGQLLWVNLIMDTLGALALARERPTKELMEKKAVGRTEPLITNIMWRNLLAQALFQIVVLLVLQFNGESIFNVRKEVKDTLIFNTFVLCQVFNEFNSRSMEKLNVFRGLHRNHLFLGIVGITIVVQVVMVELLRKFADTERLTWEQWGICIGIAAVSWPIALITKLIPVSDTPFNHVKCVKLLVS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02773 910 PRINTS H+-transporting ATPase (proton pump) signature 669 694 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02773 910 PRINTS H+-transporting ATPase (proton pump) signature 637 653 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02773 910 PRINTS H+-transporting ATPase (proton pump) signature 483 501 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02773 910 NCBIfam calcium-translocating P-type ATPase, PMCA-type 174 894 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu6g02773 910 SUPERFAMILY Calcium ATPase, transduction domain A 133 204 IPR008250 -
Vimu6g02773 910 Gene3D - 174 206 - -
Vimu6g02773 910 Gene3D - 340 537 IPR023299 GO:0000166
Vimu6g02773 910 PRINTS P-type cation-transporting ATPase superfamily signature 530 541 - -
Vimu6g02773 910 PRINTS P-type cation-transporting ATPase superfamily signature 552 562 - -
Vimu6g02773 910 PRINTS P-type cation-transporting ATPase superfamily signature 637 656 - -
Vimu6g02773 910 PRINTS P-type cation-transporting ATPase superfamily signature 27 41 - -
Vimu6g02773 910 PRINTS P-type cation-transporting ATPase superfamily signature 661 673 - -
Vimu6g02773 910 SMART Cation_ATPase_N_a_2 12 86 IPR004014 -
Vimu6g02773 910 Gene3D - 327 682 IPR023214 -
Vimu6g02773 910 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 894 IPR023298 -
Vimu6g02773 910 FunFam Calcium-transporting ATPase 532 682 - -
Vimu6g02773 910 FunFam Calcium-transporting ATPase 654 896 - -
Vimu6g02773 910 Gene3D - 108 170 - -
Vimu6g02773 910 SFLD Haloacid Dehalogenase 312 690 - -
Vimu6g02773 910 SUPERFAMILY HAD-like 328 742 IPR036412 -
Vimu6g02773 910 SFLD p-type atpase 312 690 IPR044492 -
Vimu6g02773 910 Pfam Cation transporting ATPase, C-terminus 722 892 IPR006068 -
Vimu6g02773 910 Pfam E1-E2 ATPase 174 308 - -
Vimu6g02773 910 PANTHER CATION TRANSPORTING ATPASE 2 895 - -
Vimu6g02773 910 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 337 534 IPR023299 GO:0000166
Vimu6g02773 910 Pfam haloacid dehalogenase-like hydrolase 328 651 - -
Vimu6g02773 910 NCBIfam HAD-IC family P-type ATPase 607 717 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02773 910 NCBIfam HAD-IC family P-type ATPase 271 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02773 910 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Vimu6g02773 910 Pfam Cation transporter/ATPase, N-terminus 14 81 IPR004014 -
Vimu6g02773 910 FunFam Calcium-transporting ATPase 340 537 - -
Vimu6g02773 910 Gene3D - 207 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02773 Vimu-Chr6 24313642 24316455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02773 1 899 Primary Pumps ATPases AT3G63380 68.608 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02773 K01537 - gmx:100790034 1466.83