Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02770 ATGATTGATGAGGGTTCTGACTCTATCCTGATATTCCGTGATTACGCCTTCTCAGGTAGAGAAGGGAGGTCCTTTAGCCTCAGGGTATTTCTATACCGAGGTGGTTTCACTGGACTAATCTCGGGTGGCGGTCTGTTGAGTGTATCCCAGCCAGGTCCACCCGGGTGTAGAGAGCGGCGAACATACATAGTCATACCGTCCGGACAGAGTTTAGAGAAAATGGGTGCTCAAGAAGACACTTTGGAAGAAGCCCTGCAGACGGAGCAACACCTGGACGTCATGCCGGAGAGCTGTGCAGGACCATCCGAGCAGACGAAATCGATCGATCCCTCCATACAATCGAGCGAAAGAGCAAACCCTAACATGGAGTCGCACGGCGGAGGCCCCCTTCGTTCCCGCAGTTCCCAGTCCCCTTCACCTTCCCACTCCGCCTCAGCCTCCGCCACATCCTCAATCCACAAGCGCAAGCGTGCATCCGAAGACCACGCGCCTCCCTTCCCGCCCTCCTCCTTCTCGGCTGACACTCGCGACGGCGCCCTCACCTCCAATGACGACCTGGAGAGCATCTCCGCCCGTGGCGCCGACTCCGATTCAGACGACGACTCCGAGGACGCCGTCGTCGATGATGACGAAGAGGACTACGACAACGACTCCTCCATGCGCACCTTTACCGCCTCCAGACTCGGTAACCCTCCCTCCGCTCCCCGTAATACCAAGCTAAAGACTGATAACTCAGCTGTAAAAATTGAGAACTCCGACGGCGCAAAAGACGCCGCAAATGCCGGAGCTGGTGCCATGGAGATTGGACCCGTCCCTAGCATTGTGGTTAAGGAAGACCCGACTAAGATTTTTACAGATAATTTGCAAACGAGTGGGGCTTATACAGCTCGGGAAGAGAGTCTCAAGAAGGAGGAGGAAGCGGGAAGGCTTAAATTCGTATGCCATTCAAACGATGGTGTTGATGAGCATATGGTTGATTGGATTGAAGAATATATTTGCTCGACAACTTCCCAATATGCCCAAGGAGTATATTGTTCGACTTGTCATGGACAGTCTGTAATGGTCATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCTAGCCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGTGATGTGGATGGGCTGACACATTTTCTCACATATGCTGACAACAATGCTGTTGGCTATTTTATCAAACAGGATTATGATGGAGGGATTCTGATGGAATGCAAGATAGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGACAGGCTATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATAGTCTATACTGGAATTGATTTTCAGAAGAAAGAAGCAGGCATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCTAGATTCAGAAGTCTAAATGTCTCTACTGACAATACTACTAATCAAAAACATTTGTCTAGTTTTATGCGATCACTTCTGAAGGCAAGCTGGTTATATTCTATGCTTGATCACGCTGACGCATGGCCATTCAAGGAGCCTGTTGATGCACGGGATGTCCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAAGAGGGTGGAGTCAGAGCTATATTATGTAACATTTGAGATGTTTGTTGCCGATGTCAGAAGAATGTTTGCAAATGCGCGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTGCTACAAGGCACGTGCCCACACTTCCACCTCCTAGTTTACCCTTTTCCTGTGATGTTTCTTACATTTATGATTTTCAATGCAGGTTAGAATCCCACTTTCAAAGCAAAGTACAAGCGGGTCTTCAGTCTGGCTCAAAAATTCAGTAG 2001 0.4753 MIDEGSDSILIFRDYAFSGREGRSFSLRVFLYRGGFTGLISGGGLLSVSQPGPPGCRERRTYIVIPSGQSLEKMGAQEDTLEEALQTEQHLDVMPESCAGPSEQTKSIDPSIQSSERANPNMESHGGGPLRSRSSQSPSPSHSASASATSSIHKRKRASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEEDYDNDSSMRTFTASRLGNPPSAPRNTKLKTDNSAVKIENSDGAKDAANAGAGAMEIGPVPSIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCHSNDGVDEHMVDWIEEYICSTTSQYAQGVYCSTCHGQSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYTGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRSLNVSTDNTTNQKHLSSFMRSLLKASWLYSMLDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESELYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRHVPTLPPPSLPFSCDVSYIYDFQCRLESHFQSKVQAGLQSGSKIQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02770 666 ProSitePatterns Bromodomain signature. 550 608 IPR018359 -
Vimu6g02770 666 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 341 441 IPR016181 -
Vimu6g02770 666 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 299 441 IPR000182 GO:0016747
Vimu6g02770 666 MobiDBLite consensus disorder prediction 219 246 - -
Vimu6g02770 666 PANTHER GH11602P 111 663 IPR037800 GO:0004402
Vimu6g02770 666 MobiDBLite consensus disorder prediction 197 216 - -
Vimu6g02770 666 PRINTS Bromodomain signature 597 616 IPR001487 GO:0005515
Vimu6g02770 666 PRINTS Bromodomain signature 562 578 IPR001487 GO:0005515
Vimu6g02770 666 PRINTS Bromodomain signature 548 561 IPR001487 GO:0005515
Vimu6g02770 666 Gene3D - 509 623 IPR036427 GO:0005515
Vimu6g02770 666 Gene3D - 322 448 - -
Vimu6g02770 666 CDD NAT_SF 352 406 - -
Vimu6g02770 666 ProSiteProfiles Bromodomain profile. 545 616 IPR001487 GO:0005515
Vimu6g02770 666 MobiDBLite consensus disorder prediction 174 189 - -
Vimu6g02770 666 Pfam Acetyltransferase (GNAT) family 344 423 IPR000182 GO:0016747
Vimu6g02770 666 SMART bromo_6 521 628 IPR001487 GO:0005515
Vimu6g02770 666 CDD Bromo_gcn5_like 528 621 - -
Vimu6g02770 666 MobiDBLite consensus disorder prediction 100 121 - -
Vimu6g02770 666 SUPERFAMILY Bromodomain 539 621 IPR036427 GO:0005515
Vimu6g02770 666 MobiDBLite consensus disorder prediction 95 246 - -
Vimu6g02770 666 Pfam Bromodomain 544 620 IPR001487 GO:0005515
Vimu6g02770 666 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02770 Vimu-Chr6 24262041 24270658 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu6g02770 Bromodomain 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02770 K06062 - gmx:100791610 792.341