Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02766 ATGGGGAGCTATGAAACTGAGCTGAATCTTAGGGCCACAGAGTTGAGGTTGGGATTGCCCGGGAGTGATGAACCTCAAGAGAAACGTCCATGCAGTGGCTCTGTTGTCAGAAGCAGCAACAAGAGATCTTCACCAGAATTGGAAGAATCCAGGTGCAAAAGCAACATTAACTCTGATTCTTCGGACTCCACAACCACAAGTGATCACAACGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCGATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAAAAGGTGGAGCAGGGCGATGGAACTGGAATGTACTTAAAAGTCAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCAGAACTCCTCAAGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATACTCAGAAAGGGAGGGATACAACGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTATGA 612 0.4592 MGSYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02766 203 ProSiteProfiles PB1 domain profile. 107 199 IPR000270 GO:0005515
Vimu6g02766 203 MobiDBLite consensus disorder prediction 56 74 - -
Vimu6g02766 203 MobiDBLite consensus disorder prediction 15 77 - -
Vimu6g02766 203 Pfam AUX/IAA family 13 201 IPR033389 -
Vimu6g02766 203 FunFam Auxin-responsive protein 102 203 - -
Vimu6g02766 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 198 IPR003311 GO:0005634|GO:0006355
Vimu6g02766 203 Gene3D - 102 203 - -
Vimu6g02766 203 SUPERFAMILY CAD & PB1 domains 103 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02766 Vimu-Chr6 24230234 24231197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02766 98 200 B3 DNA Binding Superfamily AT2G46530 36.893 3.89e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu6g02766 AUX_IAA 1.5e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02766 K14484 - gmx:100792134 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02766 6 24230234 24231197 Vimu6g02766 6 24230234 24231197 ECH
Vimu6g02766 6 24230234 24231197 Vimu3g01537 3 29063016 29063937 PCT