Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02765 ATGGAGGTTGGCCTCAACAAGGAGAAGAACATGGGCTTTGAGGAAACTGAGCTAAGGCTTGGACTCCCTGGAGGAAACGCTGCCTCACCCACTGAAGAACTTCTTAGGAAGAGAGGTTTCTCTCAGACTCAAACTCACCATGACACTGCCACTGTAGATTTGATGCTTAATCTTTCATCCAAGGAACCAACCACTGGATCAGATCCATCTCATAAACACAACACCTTGCCTAAGGACAACACCCTTCTCCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGCATTGGAGAAGAGAGTGAGAAGAATAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCTCCTTATCTCCGCAAAGTGGACTTGAAGATGTATAAGAGTTACCGCGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAACTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAAAGCAAGAACAGGAGCTAG 747 0.4726 MEVGLNKEKNMGFEETELRLGLPGGNAASPTEELLRKRGFSQTQTHHDTATVDLMLNLSSKEPTTGSDPSHKHNTLPKDNTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSIGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02765 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 233 IPR003311 GO:0005634|GO:0006355
Vimu6g02765 248 FunFam Auxin-responsive protein 123 239 - -
Vimu6g02765 248 Pfam AUX/IAA family 15 235 IPR033389 -
Vimu6g02765 248 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Vimu6g02765 248 MobiDBLite consensus disorder prediction 44 65 - -
Vimu6g02765 248 MobiDBLite consensus disorder prediction 16 96 - -
Vimu6g02765 248 Gene3D - 122 239 - -
Vimu6g02765 248 SUPERFAMILY CAD & PB1 domains 118 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02765 Vimu-Chr6 24209627 24214050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02765 121 231 B3 DNA Binding Superfamily AT3G61830 33.333 1.79e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vimu6g02765 AUX_IAA 1.5e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02765 K14484 - gmx:100810013 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02765 6 24209627 24214050 Vimu6g02765 6 24209627 24214050 ECH