Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02757 ATGGCGAATCAGGTGGTGAAGGTGCGGAGGAACACGATTGTAACATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTGTGAGCCTTCTTCTCTTCCAATCTGTGTCAATTTTTTCTTCGATTTCTCTGCATTCGCTTCCTCCTTCACTCTTTGCCCCGATGCGGGAGCATCTGGACTTTGCGTAACCGGAGGGAGATATGGGAAGTGCATTTATGATAAAATTACGGATGAAGAATTGGAAAGTTGTCCAATATGTGGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTGAGGGCCAAAGTTTTCCCCTTGAAGGGAAGAAAGGTGAAGGCACCTGAAATTGTGACCTCAATACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTGAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCGGTCCACTAGTTTTTCCTTTGAAAAGTCCATTAAAAAAGAGGAAGAATTACTGGAAGATCATCTTGAGAGTTCAAGCTCACCAGAAAATTCAAATAAGTTTGGTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCTGCACCCAATAAAGGATCAGAGAATGGTGGCGAACCATGGGATGCAAAATTGGATCTTTGGAAGCCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTCTGATGCTAAATTAGAAACCACTCAAGTAAGTGAGAGTGACTCTCAGATGCAGAAAACTAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCTGCCTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCTGGAGAATCAAGCATATCACCCCAAGCTGTGCTTGATTCTGCCAGCAGTAATAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTGGTAGCTTCAGAAAACCAGGGAGGAGATGCACCGTTGCCACAAATTCCTGCAAGTTATGTGAGAATCAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAATCAGTGCTCCCTACATTGCGTCTATATAATTTGGTTGAGTTGTGGTTGGATACAGCATCGACGTCACAGAGAATTCCAGCAACTATTGGTTCATCAGCAAAGGATTTTGTCATGGTATTGGCTTATGCTCGGAAGGTTCCACACCCATGA 1407 0.4378 MANQVVKVRRNTIVTCMTCPLCNKLFREATTISECLHTCEPSSLPICVNFFFDFSAFASSFTLCPDAGASGLCVTGGRYGKCIYDKITDEELESCPICGIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEIVTSIPLPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSTSFSFEKSIKKEEELLEDHLESSSSPENSNKFGQNSGQSMSPCEGSQSAPNKGSENGGEPWDAKLDLWKPLNCLVEVASRSKSFKSHVQGSDAKLETTQVSESDSQMQKTKNKENKRKAKVEDEKISPYPASSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSASSNRLSRTGPIWFSLVASENQGGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQSVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKVPHP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02757 468 MobiDBLite consensus disorder prediction 265 289 - -
Vimu6g02757 468 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 464 IPR044807 GO:0004842
Vimu6g02757 468 MobiDBLite consensus disorder prediction 198 246 - -
Vimu6g02757 468 MobiDBLite consensus disorder prediction 290 310 - -
Vimu6g02757 468 MobiDBLite consensus disorder prediction 336 350 - -
Vimu6g02757 468 MobiDBLite consensus disorder prediction 151 186 - -
Vimu6g02757 468 MobiDBLite consensus disorder prediction 205 237 - -
Vimu6g02757 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 136 IPR013083 -
Vimu6g02757 468 MobiDBLite consensus disorder prediction 264 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02757 Vimu-Chr6 24145071 24152297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02757 2 387 C3H Transcription Factor Family AT2G30580 49.227 8.71e-106 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02757 K16277 - gmx:100793731 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02757 6 24145071 24152297 Vimu6g02757 6 24145071 24152297 ECH