Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02755 ATGCCTGCCCACGCGCCTGCAATCAACAAACACTCTCCGCCGCCGCCCAAAGAGGCCCATTTCAGAGGCGTCCGCAAGCGTCCCTGGGGCCGCTTCGCCGCCGAGATCCGCGATCCCTGGAAAAAGACCCGAAAGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACCGCAGCAAGAACGCTCCGAGGGCCCAAGGCCAAAACCAACTTCACCTACGTCGTTGCTCCTGCGGTTTTCCCTGCCCCTGAATCTCAGGCCCCGGCCCATGACCCACTCGCTAGACCGGTCGAGTTCTTCGGCCTTCCCTTGTTCTTCACCACGGATGCAGATTCCGGGGCGCCGGTGAGGTCGGAGTACAAGGGTTACAAGTTGGAGAACATTGCCGGTTTTGTGGTTACCAAGGAGGAGAAGAAGAAGCCGTTTTTGTTCGACCTTAATCAGCCGGCGCCGCTCTTCTGA 477 0.6059 MPAHAPAINKHSPPPPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPAVFPAPESQAPAHDPLARPVEFFGLPLFFTTDADSGAPVRSEYKGYKLENIAGFVVTKEEKKKPFLFDLNQPAPLF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02755 158 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vimu6g02755 158 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vimu6g02755 158 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vimu6g02755 158 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vimu6g02755 158 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vimu6g02755 158 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Vimu6g02755 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 92 - -
Vimu6g02755 158 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vimu6g02755 158 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vimu6g02755 158 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vimu6g02755 158 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02755 Vimu-Chr6 24117004 24118615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02755 17 76 AP2-EREBP Transcription Factor Family AT5G44210 88.333 4.84e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu6g02755 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02755 K09286 - gmx:100816599 237.654