Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02754 ATGGTTTTCTCCCCTCACTCACCTAAAACTTGTCCAGATTACGATGTCAAACCCAGTTTTACACAGATCACCGTAGCCATTTCTGTGGGGTTGTTGTTTATCGTGGTCTTTCATTTTCGTCTGAAACAATCTAGAGATCGAAAGATCATCCCACGTATAAGATTATCACGAGCAAGCCACGTCCCAAAGCTTGAAAGATTCTCCCATTACGTAGCTAGGCAAATGGGGTTCAAAGACAGAAGATTTTGTCCCCATCTATGTAGATTAGCTTCTGAATACATAAGGAAATACGAGGGACTTGAAGATGATATATACGCCTTTTTTGAGAATGAACCCGATGCCGATTCACTTTATGTGAAGCTGGTAGAGGAGTTTGAGAGATGCATTCTTAGTTACTTAGCATTTCATTGGAACTACGGTGACATAATTATGAGTCAGGTGTTGAGCTCGGAAAATGAGCCTAAAAAGAGGCTCAAGAACATAGTCATGGCAGCAACTAGGGAACAAAGGTTCGAGAGACTTGCCAAGAATCTGAAGGTGGCTAGAGTTTTTAATACCTTAGTGGAAGAAATGAAAGCGATGGGAATTGCTACAACCGATGATTCTCAATGTACCGAGGTGATGGCTCCAGTAGCTCATAGCGATAGGAGTCCAGTGCTCCTTTTAATGGGTGGAGGCATGGGAGCTGGCAAGAGCACCGTGCTCAAGGATATTCTCAAAGAACCTTTTTGGGCAGGAGCATCCGGGAATGCCGTAGTCATTGAGGCAGATGCGTTCAAAGAATCAGATATGATCTACAAGGCCCTCAGCTCAAGAGATGTCAGTGTAGCATTTTTCAATTCCAAATCTTTTGAAATGGTGACTATTGTACACCAATCATCCACAGATGCAGCCTCATCACTCTTAGTTACAGCATTGAATGAAGGACGAGATGTTATCATGGATGGCACACTGTCCTGGGTGCCGTTTGTTGTGCAGACAATTACAATGGCTAGGAATGTTCACCGTCGACGTTACCGCATGGGAGCTGGCTATAGGGTGAAGGATGATGGAACTGTAATTGAAAACTATTGGGAGAGAATTCAAGGCCAAGAGCCTGAACAAGTTGAAGGCAAAAAGCGAAAACCATATAGGATAGAGCTTGTTGGTGTAGTATGTGATGCTTATCTTGCAGTCGTTAGAGGCATAAGGAGAGCTATCATATGCAGAAGAGCAGTGAGAGTAAACTCACAGTTGAAATCACACAAGAGATTTGCTCAGGCATTTATGACTTACTGTCAACTAGTAGATAATGCACGACTATACTTCACAAATGCATTGGAAGGTCCACCCAAGTTGATAGGATGGAAAGATAGGGACAAGACACTGCTGGTTGATCCAGATGAATTCGACTGTTTGAAGAGGCTTGCCAGGTTGAACGAAAATGCGAACTCCATTTATGAACTTTACAAGCACCCCAACCCAGCTTGTGAAGCTGGATCAGTATGGAAAGACATCGTATTATCTCCTTCAAGGTTGAACATCCAACAGGAGCTCAAGTACTCAATCCAAAGAATTGAAAGCGTCAAATATAACTTCACCCTTGAGTCTAGTAACAGATGA 1602 0.4295 MVFSPHSPKTCPDYDVKPSFTQITVAISVGLLFIVVFHFRLKQSRDRKIIPRIRLSRASHVPKLERFSHYVARQMGFKDRRFCPHLCRLASEYIRKYEGLEDDIYAFFENEPDADSLYVKLVEEFERCILSYLAFHWNYGDIIMSQVLSSENEPKKRLKNIVMAATREQRFERLAKNLKVARVFNTLVEEMKAMGIATTDDSQCTEVMAPVAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDMIYKALSSRDVSVAFFNSKSFEMVTIVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRRRYRMGAGYRVKDDGTVIENYWERIQGQEPEQVEGKKRKPYRIELVGVVCDAYLAVVRGIRRAIICRRAVRVNSQLKSHKRFAQAFMTYCQLVDNARLYFTNALEGPPKLIGWKDRDKTLLVDPDEFDCLKRLARLNENANSIYELYKHPNPACEAGSVWKDIVLSPSRLNIQQELKYSIQRIESVKYNFTLESSNR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02754 533 Pfam Zeta toxin 212 330 IPR010488 GO:0005524|GO:0016301
Vimu6g02754 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 351 IPR027417 -
Vimu6g02754 533 Gene3D - 198 442 IPR027417 -
Vimu6g02754 533 PANTHER UNCHARACTERIZED 14 525 IPR044802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02754 Vimu-Chr6 24101314 24104802 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02754 - - gmx:100794775 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02754 6 24101314 24104802 Vimu6g02754 6 24101314 24104802 ECH
Vimu6g02754 6 24101314 24104802 Vimu3g01527 3 28832831 28850330 PCT