Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02744 ATGGACTTAAACTACCCAGAAGACTTCTACTCCAACATTGGAACTTCCAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACAACAGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAACAAAGGGCCAACAACAACACCAAATCCACTTTCTCTCCTCCTCCTACTCCTCCTACTCCTCCTTCAACTTCTAACAAAGTTTATGCAACCAACAACCATGCAGATCTCGTTCAAGTTCCAACCCAATCTACTCCTTCTCATGCTAATACCTTCCCTCATCTTTCTTTTCCACCCACTTCACTCACTGTTACACCTTCCCATGCTGAGCTTTCGTGTGCAGAAAAAGACCAACTGGGTCACGTCTTTCTGCAGGATTGGAGTACCACCAATTTCAACTTCTACTCTAATCCATTGTGTTTTCATGAAATTAAGAATAAGTTTGAAGACACTGAAGAGAATGGCCTGGATTTGGAGCTCAGGTTGGGTCATCATCCATAG 507 0.4359 MDLNYPEDFYSNIGTSRSYECIFCKRGFTTAQALGGHMNIHRKQRANNNTKSTFSPPPTPPTPPSTSNKVYATNNHADLVQVPTQSTPSHANTFPHLSFPPTSLTVTPSHAELSCAEKDQLGHVFLQDWSTTNFNFYSNPLCFHEIKNKFEDTEENGLDLELRLGHHP 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02744 168 Gene3D Classic Zinc Finger 12 56 - -
Vimu6g02744 168 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vimu6g02744 168 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Vimu6g02744 168 MobiDBLite consensus disorder prediction 47 67 - -
Vimu6g02744 168 Pfam C2H2-type zinc finger 19 44 - -
Vimu6g02744 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Vimu6g02744 168 PANTHER OS07G0101800 PROTEIN 16 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02744 Vimu-Chr6 23968057 23968563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02744 19 47 C2H2 Transcription Factor Family AT5G43540 82.759 1.27e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02744 - - gmx:102664910 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02744 6 23968057 23968563 Vimu6g02744 6 23968057 23968563 ECH