Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02737 ATGTCCCCATTAACATTTCTTATAAGACTCTTTATGCCTCTTATTCCCACTTGTGTTCGTGTGCCTACAAATTTTATTCACATAAAATACACCTCTTTCTCTTCTGCTCATCATCACTATTATACTCATTCTATGGCTTCTGCAAGTGGAAATGCTGCCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAATTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTCGCTGCCATACATAAAGTCTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCGAGGAACATGGAGAATAATAATCATCAGTGGGCAGGGAATCAAAGTGTTGCAGGAGAAGCAATGAACCATCCATTTTGTCCGACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATGAACGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAAAGAGCATACAAGAACAATGAGTTGGGTGAGCTGCAAGAACTGGCGCTCAGAATGATGAGGAACTGA 753 0.4502 MSPLTFLIRLFMPLIPTCVRVPTNFIHIKYTSFSSAHHHYYTHSMASASGNAASNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNMENNNHQWAGNQSVAGEAMNHPFCPTYMNPISPQSSLESIDHSSMNDGMSMQDIQSREERAYKNNELGELQELALRMMRN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02737 250 Pfam Lateral organ boundaries (LOB) domain 60 158 IPR004883 -
Vimu6g02737 250 Coils Coil 140 160 - -
Vimu6g02737 250 ProSiteProfiles LOB domain profile. 59 161 IPR004883 -
Vimu6g02737 250 PANTHER LOB DOMAIN CONTAINING PROTEIN 56 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02737 Vimu-Chr6 23931357 23932904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02737 47 250 AS2 family AT2G42430 54.508 3.50e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g02737 LOB 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02737 K13944 - gmx:100801508 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02737 6 23931357 23932904 Vimu6g02737 6 23931357 23932904 ECH