Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02736 ATGATTATGATTTGCACAAGGTTGAAGAGACCCAGAAAACAACCAAAAATACTAAAAGACCACAAACCCCTCAACCAAAAGGCCAACATGACTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGCTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTTCCTGTCAGTGACCGTTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAAGTAGCTCATCTCAGGGAACAGGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGTAAACCCTAATGAGAAATACTTTGGAAAATCTACCAATTTTCCCCAGTATCTTCAGAGTTGGTTCCAGATGGAGAATTCCAACTCGGCTTCACAATTTCTTCCTAAATTGTCCACTGATACTTCAACACAGTACTATGGAAATACTAATACCTTCATGGACCCAAACCCTATTGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTCCTTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGGCCTGTGACATGCAAAGGCAGTGGACCTTTTATCAAGTGGATAACCTTCAGTAA 738 0.4268 MIMICTRLKRPRKQPKILKDHKPLNQKANMTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQVAHLREQAGQIYLNASATVNPNEKYFGKSTNFPQYLQSWFQMENSNSASQFLPKLSTDTSTQYYGNTNTFMDPNPIGNDDNSVTVEESISFSSFEESCNSMACDMQRQWTFYQVDNLQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02736 245 Coils Coil 114 134 - -
Vimu6g02736 245 PANTHER LOB DOMAIN CONTAINING PROTEIN 31 212 - -
Vimu6g02736 245 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Vimu6g02736 245 ProSiteProfiles LOB domain profile. 33 135 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02736 Vimu-Chr6 23920489 23921334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02736 34 160 AS2 family AT3G58190 75.194 1.56e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g02736 LOB 1.4e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02736 6 23920489 23921334 Vimu6g02736 6 23920489 23921334 ECH