Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02734 ATGCCTTTGAAAAGGGTAAAACAGAAAGAAGCTGTAAATCGGTGGAAAGCTATGATCATAAAGGGCAGCATGGGCAATAAGATCATTGTTGAAAAGGACCTTAAGAGGGGTAGCAGGGTACCTTCTGTAGGTAAGGAACAGTTGGAAGCTTTGGTTGGTGGGGTGGTGGGAATTGGCGGGGTGAGTGATGGGTGCGGATCGTCTGATACTGCCAACAGTTGGACCGCCATTAAAACGGCGAGCGGGGTTGCGGAGGAAGCAGGCTGGAAGAGGTTCCTACAGGGGGAGCTAGGGGAAGGAGGGATTGTGATCCTTCTGTTATTTGAAATGTTTTATGTTGTTTTCATTGTATTCTGGATCTTGACATGGGAGGACGCATACTATAACAATCCTGATGATTATGACTCTTCAGAAAATAAGCACTGCCAGAATATCTTGGAACAGATTGGATATGGGAAATTTTCGCACAACGCATTAGGGTTAGCAGTGGCTAAGATGTCATATCATGCATATTCATTAGGAGAAGGTATTGTTGGACAGGTTGCTGTTACAGGAAAGCATAGGTGGATCTGTGCAGATAATCAGGTTTCAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACTATTGCTGTTGTTGCTGTAGCCCCACTTGGTGTTGTTCAGCTTGGTTCTCTCAATAAAGTGATTGAAGATATGGGGTTTGTAGCTCATATCAGAAATCTCTTTCAAAATTGCTCAATGGCCCAATGTCCTAGTCAAATACAGGGTAGTTTGAAGAGTTCTTTATCTCAGTTGGATATATCGAAGGAAAATTTGTCTTCAGATGTTATGCCGACTGGCTTTTACAATCCACAGAAATCTATGAAGAGTGAAACAGCAGATGTTTTAATGTCCCTTCAATGTTCTGGGAGGAACTATGCACTTCATTCTGCTTGTCAGAAAATGTCTGATAACGTGGCCAAGCAGGAGGGGCCTGAATTGTACAGTGATGAAAGTTCCATTTTGCTTCAGTCAATATCCAATATGATGAATGTGGAGCATCATGATTTTGAAGAGATGAAACCTCTCTATGGGAGGAAGTGTGAAGAAGGAAGTAGTGGTTGCAAAGATGTGAGGTTTGAATCAGAAAACAATGTCTCGTCATTTTTAAGTGACTTTATTACAGATAATGATTTCATATGTCCATCAGAAAAAGTCAGAGTTGATTCTGCATGTTTTCCCTCAGCTTTTCTTGATACAGTTGTTTGTGAAACTGATAAGTTGCATTGTGTGGATAATAACCAAAAAGGGGTGTTGAATTTCACCCAACCTTCAGATGCAAACTCCCAACATGTTGAAAAGTCAAAGTTTCGTACTGAGCCTTCTTACAATGATATGTCAAATGTGTTGAATTTCCCTGCTGGCTGTGAGCTACATGAAGCACTTGGACCATCTTTTCTGAAAGGGAGTAAAAGTTTTGATTGGGCAGCACAGTTTAATCAAGATATGAAAACTGTTGAAATGTCAGATGAGATTAGCACTAGCCAATTGACTTCTGAATCTCGTCCAGAGCATCTTTTGGAAGCACTGGTGGCCAACATTTGCCATAGTAATAATGATGTTAATAGTGAATTATCGTTTTGTACATCAATGCAATCTGCAATGGCCTCGGGAAAAAACCATGAAGCTTCCACTCAGAATATGTATGCTATTAATTCAGAAGGTTATTCAATAGATCAGTTCTCTCTTGTCAAAGAGGACAAACACCATTCTTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCCAAAGGTGTTTCATCTACATTCCCTAGTTCAAGTAGTGGACAACTTGAAAGGTCGTCTGAACCATCTAAGAACAGCAAAAAGAGGGCAAGGCCTGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAATTAATCCAAGATCGTATTAAGGAGTTGAGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGCATTGATTCTCTACTGGAGCGCGCCATAAAGCACATGCTCTTTCTTCAAAGCATAACTAAACATGCTGACAAGCTAACTGACTTTGGTGATACAAAGTCAAAGCTGCATCACATGGAAGCAGACATTGTTGGATCCTCTAATTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGACATCTGAAAGTTCATTCAATATTAGTGGAGAATCTCAGCAAGAATGGACAGATGCTCGTTGAGATGCTCTGCGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGTTTGGGTCTTACCATTTTGAAAGGTGGCACTAAAGTTCATGGTGAAAAGATATGGATATGCTTTGTTGTCGAGTTTAAAAAGCAAATACATTACTCCATTGATTGTTGTGTTGACAGGGTCAAAACAACAGAAATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAAATACTGCAATCGAAGAGCACGTGTATTCACAATAACTGATCGGTTCTTGGAAACTTTGTTACCCCTCACTGTGTAA 2556 0.4155 MPLKRVKQKEAVNRWKAMIIKGSMGNKIIVEKDLKRGSRVPSVGKEQLEALVGGVVGIGGVSDGCGSSDTANSWTAIKTASGVAEEAGWKRFLQGELGEGGIVILLLFEMFYVVFIVFWILTWEDAYYNNPDDYDSSENKHCQNILEQIGYGKFSHNALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVSGSGLSFEFADGWQSQFSAGIRTIAVVAVAPLGVVQLGSLNKVIEDMGFVAHIRNLFQNCSMAQCPSQIQGSLKSSLSQLDISKENLSSDVMPTGFYNPQKSMKSETADVLMSLQCSGRNYALHSACQKMSDNVAKQEGPELYSDESSILLQSISNMMNVEHHDFEEMKPLYGRKCEEGSSGCKDVRFESENNVSSFLSDFITDNDFICPSEKVRVDSACFPSAFLDTVVCETDKLHCVDNNQKGVLNFTQPSDANSQHVEKSKFRTEPSYNDMSNVLNFPAGCELHEALGPSFLKGSKSFDWAAQFNQDMKTVEMSDEISTSQLTSESRPEHLLEALVANICHSNNDVNSELSFCTSMQSAMASGKNHEASTQNMYAINSEGYSIDQFSLVKEDKHHSLSSSSGICGVMSSKGVSSTFPSSSSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFGDTKSKLHHMEADIVGSSNYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGGTKVHGEKIWICFVVEFKKQIHYSIDCCVDRVKTTEMYTDWISCGRLFKYCNRRARVFTITDRFLETLLPLTV 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02734 851 MobiDBLite consensus disorder prediction 613 652 - -
Vimu6g02734 851 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 119 253 IPR025610 -
Vimu6g02734 851 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 119 800 IPR043561 GO:0003700|GO:0006355
Vimu6g02734 851 MobiDBLite consensus disorder prediction 628 652 - -
Vimu6g02734 851 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 637 686 IPR011598 GO:0046983
Vimu6g02734 851 MobiDBLite consensus disorder prediction 613 627 - -
Vimu6g02734 851 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 650 691 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02734 Vimu-Chr6 23889276 23896538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02734 115 799 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.419 1.64e-128 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02734 - - ccaj:109796613 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02734 6 23889276 23896538 Vimu6g02734 6 23889276 23896538 ECH
Vimu6g02734 6 23889276 23896538 Vimu3g01288 3 22947374 22957154 PCT