Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02731 ATGGCACTCAACCCTAACCCCTCTTACAAGCTGCTTCCACCCATCAAAACTCATGCTAGCACAATCCTTCACAAACCAAAACCTCCTTCAAATTCTGCTTCTGCTTTACCCATACTTGCCATCATAGTTCCCACCATCTTTGTCACTGTTTTTATACTCATCACCTACCTAACTCTTGTCACCAAATGCTTCTCAAACTTGTACCTATTTCACCCCTTGAGATGGTTTTTCTCCCTACTTACCCCTCAACATGAAGATCAAGACCCCTTCATAGCACTCTCTCCCAGGATGTGGAGCCAAGGACTTGATGAATCTGCAATCAGAGAAATCCCAACACTTCAATTCACAAAAGGAGATGTTGAAAAGAATCATCAAAGTGTGTATGGCTGCGTGATTTGTTTGACTGAGTTTCAAGATCATGATATGCTGAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTTCACTGCATTGACATTTGGCTTCAAACCAGTTCCAATTGCCCTCTTTGTAGATCAAGCATTGTATCAGGCAACGCAAACTGTCCAACGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTTTCTTACGTGGACAGTGATGAGGATTTTGTTGTCATTGAACTTGAGAGAGAACATGAGGAAGCACTGCCACAGATGATGCAACAAGAAAGAAGTGACTCAAGGGAAAGAGTTGTAGAGAGTAGAAGTCAGTCTATTATAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAG 801 0.4207 MALNPNPSYKLLPPIKTHASTILHKPKPPSNSASALPILAIIVPTIFVTVFILITYLTLVTKCFSNLYLFHPLRWFFSLLTPQHEDQDPFIALSPRMWSQGLDESAIREIPTLQFTKGDVEKNHQSVYGCVICLTEFQDHDMLKVLPICKHAFHFHCIDIWLQTSSNCPLCRSSIVSGNANCPTDHIIAPSSSPQDSQLLSYVDSDEDFVVIELEREHEEALPQMMQQERSDSRERVVESRSQSIIRKCHHVSIMGDECIDVRKKDE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02731 267 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vimu6g02731 267 SUPERFAMILY RING/U-box 108 181 - -
Vimu6g02731 267 SMART ring_2 130 171 IPR001841 -
Vimu6g02731 267 PANTHER RING-H2 FINGER PROTEIN ATL16 15 267 IPR044600 GO:0016567|GO:0016740
Vimu6g02731 267 FunFam E3 ubiquitin-protein ligase ATL6 92 178 - -
Vimu6g02731 267 Pfam Ring finger domain 130 172 IPR001841 -
Vimu6g02731 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02731 Vimu-Chr6 23850861 23851687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02731 30 266 C3H Transcription Factor Family AT1G04360 38.519 7.18e-48 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02731 K19041 - gmx:100802567 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02731 6 23850861 23851687 Vimu6g02731 6 23850861 23851687 ECH
Vimu6g02731 6 23850861 23851687 Vimu3g00120 3 941204 942235 PCT
Vimu3g01295 3 23052169 23053206 Vimu6g02731 6 23850861 23851687 PCT