Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02730 ATGGAGGAGTTAAAGGAAAAGGAAAGAGAGAAAATAAAGTACAGAGGAGTAAGAAGGAGGCCATGGGGAAAATATGCAGCAGAGATTAGAGATTCAGCTAGAAATGGAGCTCGCGTGTGGCTTGGGACCTTTAACACTGCTGAGGAAGCAGCAAGAGCTTATGATCGAGCTGCCTTTGAAATGAGAGGTGCTATGGCCATTCTCAACTTCCCACATGAACATCCTCCTTTCACTTCATCATCTAAAACTGAAAATGCTAAACAAGTTGTGGTATTTGAGTGTCTCGATGACAAATTGTTGGAGGAACTCCTTGATTGTGATCACAAAAACATGAATCAGAACTTTGCCAACTAG 354 0.4209 MEELKEKEREKIKYRGVRRRPWGKYAAEIRDSARNGARVWLGTFNTAEEAARAYDRAAFEMRGAMAILNFPHEHPPFTSSSKTENAKQVVVFECLDDKLLEELLDCDHKNMNQNFAN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02730 117 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Vimu6g02730 117 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vimu6g02730 117 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Vimu6g02730 117 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
Vimu6g02730 117 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Vimu6g02730 117 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Vimu6g02730 117 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Vimu6g02730 117 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Vimu6g02730 117 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Vimu6g02730 117 PANTHER DNA-BINDING DOMAIN 7 83 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02730 Vimu-Chr6 23846400 23846753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02730 10 109 AP2-EREBP Transcription Factor Family AT3G23230 55.738 1.98e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g02730 AP2 1.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02730 - - gmx:100800069 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02730 6 23846400 23846753 Vimu6g02730 6 23846400 23846753 ECH
Vimu6g02730 6 23846400 23846753 Vimu3g00700 3 7697580 7698221 PCT
Vimu3g01300 3 23095965 23096387 Vimu6g02730 6 23846400 23846753 PCT