Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02729 ATGGATTTTAATTCTTCGTTTTCATACCAAAGTCTAGAATCCCATCTCAACTCTTGGGAAGCGTTGTTTTCGTTCAACAACAATGCAACAAATGAATCGTCCTTATCGTTACAAGAGCACACCTCTGATATCACAGACGATGGTTCAAATCCACAGCCTCTAACTATAGCCCCAACGAAGAAAGAGAGGAGACCCTATAGAGGAGTAAGAAGAAGGCCGTGGGGAAAATTCGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTTTGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTTTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCGGCACAAGTGGTTGTGGAGTCCCTCAAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCCTTGTTGGAACTGAAAAGGATGCACGTGATGAGAACGAAATCTAGGGCTAGCAGGAGTGGTGTTAAAAAGGTTAAAAGGGGTTGCAGCAAATTGAAACCGGATCCTACTGCTGAAACTGTGTTGGTCTTGGAGGATTTGGGTTCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTGCTGA 630 0.4429 MDFNSSFSYQSLESHLNSWEALFSFNNNATNESSLSLQEHTSDITDDGSNPQPLTIAPTKKERRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQVVVESLKDMGFKALRNGVSPLLELKRMHVMRTKSRASRSGVKKVKRGCSKLKPDPTAETVLVLEDLGSEYLEQLLTFTSPGSWC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02729 209 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Vimu6g02729 209 MobiDBLite consensus disorder prediction 41 56 - -
Vimu6g02729 209 Pfam AP2 domain 66 111 IPR001471 GO:0003700|GO:0006355
Vimu6g02729 209 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Vimu6g02729 209 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Vimu6g02729 209 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Vimu6g02729 209 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Vimu6g02729 209 PANTHER DNA-BINDING DOMAIN 42 200 IPR044808 GO:0003700|GO:0009873
Vimu6g02729 209 CDD AP2 73 122 IPR001471 GO:0003700|GO:0006355
Vimu6g02729 209 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Vimu6g02729 209 MobiDBLite consensus disorder prediction 41 68 - -
Vimu6g02729 209 FunFam Ethylene-responsive transcription factor 2 64 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02729 Vimu-Chr6 23839977 23840606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02729 25 208 AP2-EREBP Transcription Factor Family AT3G23240 47.340 4.98e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu6g02729 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02729 K14516 - gmx:100818907 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02729 6 23839977 23840606 Vimu6g02729 6 23839977 23840606 ECH
Vimu6g02729 6 23839977 23840606 Vimu3g00114 3 881393 882028 PCT
Vimu3g01301 3 23100452 23101057 Vimu6g02729 6 23839977 23840606 PCT